result

Gene information

Detail information of AfisC2G00398

Location

Gene	Chr	Start	End	Strand
AfisC2G00398	chr2	51399931	51402696	+

Sequences

CDS

>AfisC2G00398
ATGTACGTTTCTGATCATCAAAAAGGCGATCTATCTGACATCATTCGCAGTGCTAACCTTACTATCCAATCAGAAACTGACCATGACAGATGGAAGTTTCCAGAAGATTCTCGGGCTTCTTTTCAGCAACTTCCAACAAATGATTTTGATACTAGTTGTAGCATAAAAGACTCACTGTTACATGGTGGTGACCAGATGCTAGTTGACCAGAACATGTTGAGTGTTGGTGATGAGAGTATAAGGACACCGAATGATAATATTATTTCTCGGGTTTTTCATCTTTCCTCACCTGTAAAACAATCAGAGTTGGTGTTAGGACAAGGGGATAGTATATCTTCACCTTATATTCCCGGTGTCAAGAGAAGGAAAAGTCTGCCAAGAAAAGTAGTATGTATTCCTGCACCAGGAAACACAAATTCTAGTAGTGGTAGGGCTACCAGTGGAGAAGTTGTTCCTTGTGATCTCTGGGCATGGAGGAAATATGGTCAAAAACCTATCAAAGGTTCTCCTTATCCCAGGGGATATTACAGATGTAGCAGTTCAAAAGGATGTGCAGCACGAAAACAAGTAGAAAGAAGCAGAACTGATCCAAATATGCTAGTCGTCACTTACACTTCTGAACACAATCATCCTTGGCCTACTCAAAGAAATGCACTTGCAGGCTCTACTCGGTCCTCCTATCCTTCTAAACACCCAAAACCATCTCCCTCCACAAATTCGAATCCAAAAGATACAAACAAAACATCAACAACAGCATCAAACTCGGGTTCAACTTCTATCATAGAAGAAGTGTCAGAAACAATGGATAGAGCAAATGAAGCATTATATGATACGTGTATGGAAAATGATGATTTGTTTGCGAATTTAGCTGAGTTGGAGAGTGACCCAATGAGCTTATTGTTTGAAAAATCGGATGTGAAGAATAATGGAAAGAATTGCAAGGAGGTTGATGATGCATTTGATGATATCTTTGATTGGGGACAGAGTTCATTTGTAGATCATTCAAGTCAGTAG

Protein

Gene

>AfisC2G00398
CTTTCAAGCATTTCTCTCCTACACCGAAAACTGCACTTTTTCCATATTATGTCCCCAACTCTCAAATTCTTAATCCAACAATAAGTCATCATGTACGTTTCTGATCATCAAAAAGGCGATCTATCTGACATCATTCGCAGTGCTAACCTTACTATCCAATCAGAAACTGACCATGACAGATGGAAGTTTCCAGAAGATTCTCGGGCTTCTTTTCAGCAACTTCCAACAAATGATTTTGATACTAGTTGTAGCATAAAAGACTCACTGTTACATGGTGGTGACCAGATGCTAGTTGACCAGAACATGTTGAGTGTTGGTGATGAGAGTATAAGGACACCGAATGATAATATTATTTCTCGGGTTTTTCATCTTTCCTCACCTGTAAAACAATCAGAGTTGGTGTTAGGACAAGGGGATAGTATATCTTCACCTTATATTCCCGGTGTCAAGAGAAGGTATGTATACTATAAATTATATAATGTCAATTTTCTTATGTTAAGCCCTCCAAGAAGTGGTTGTATAACATAACTGAGCACCAAACTAACAGCAAATTGCTGAGTTCAAAATCAAATTATGATTGTGTTGTATAAACCTTTGATTTATTCACATGTATGTTATATACTTTTGATTTATTAGACTAGCAAATGAAACCTATCAGGGCAGTAGAAGACAGTGTTTTTTTTCTTAAATAAAAAAAATGTCAATTTTAAGCAGGAGCTATTATCATTTTTATGATATAAAATATTGCATTAGCTTAGTAACAAATTTGTATATTGCTGAATCAATGGATGAAATTAATATTGCATTTTTTTGGCACAACTATAATATATATATATATATATATATATATATATATATATATATATATATATATATAATCCATATTTTTGGCATATTAAGGTAATAAAGAATCAGAAGCAGATGGTCATATTTCTACAAATGAGAAAAAGAAACACAATTTTAACACCTAACAGTTCGTTACTTCATTGTAATTGTAAACGTAGCTTTATTTCTGGTAAACATTGAGTTTGATGCGATGTTAGATTCTTATTTGCCCAATGACTTTAAATTTACAAGTTTGAGTAAGTTCTGAGATAGAAAGCTCTCCTTATTTATCCAAAGAACATTAATTCATGTACTTCATTCTGATTGAAATAATTGGTGAATCAATCCTTATTTTTTTTTCATTTTGTAATTAATTACAGGAAAAGTCTGCCAAGAAAAGTAGTATGTATTCCTGCACCAGGAAACACAAATTCTAGTAGTGGTAGGGCTACCAGTGGAGAAGTTGTTCCTTGTGATCTCTGGGCATGGAGGAAATATGGTCAAAAACCTATCAAAGGTTCTCCTTATCCCAGGTAATACTTTATACATTTGTATAACAGAATATTAAGTCAACATATTGGTAAGGTGAATCAATATATTTTGCTTATTTAAGTTTTAACTTAAACTGTACTGTTGGATGTGAAATTATATCATTTACTCCAGTGTAAAGTCGAGTAGAGTTTTAATGTTATGTACCACTGGAAAAAAAAATGTGTGGTTCAAAAAAAAATGAAGCATTTTAGCAATGTTCAGTATTATGTATAACAGAATATTAAGTCAACATATTGGTAAGGCGAATCAATATATTTTGCGTATTTAAGTTTTAACTTAAACTGTACTGTTGGATGTGAAATAATATCATCTACTCCAGTGTAAAGTCAAGTAGAGTTTTAAAGTTATGTACCGCTGGAAAAAAATCGTATGGTTCAAAAAAAGTGAAGCATTTTAGCAATGTTAAAGTGCACCATCATTCTTAGACGTTCAATGATCCAGAACACTTGCTGAATTTCTGCTTTAGTTTTGCACCTACAGATTTTCAACAATAAGAAATCTCCTGTCCTAAAATTTTGTGCGCGCCGTTGTCTTCCAATAATTTCGCTACCGTTATGTTACATGAATTATTTAATACAGTTATAAAAAATGGACAATTATGACACAGTGAAACATGGGAACACAATGATTCAATGAAAAATGATTTCACTTGATTTCTAAACCAAAAAATATTGGATACGACCACTATTGTTGTTTATCAGTGTTTATTTGCATCACTAAAAGATACATTATGCATGAAAAAATGCAGGGGATATTACAGATGTAGCAGTTCAAAAGGATGTGCAGCACGAAAACAAGTAGAAAGAAGCAGAACTGATCCAAATATGCTAGTCGTCACTTACACTTCTGAACACAATCATCCTTGGCCTACTCAAAGAAATGCACTTGCAGGCTCTACTCGGTCCTCCTATCCTTCTAAACACCCAAAACCATCTCCCTCCACAAATTCGAATCCAAAAGATACAAACAAAACATCAACAACAGCATCAAACTCGGGTTCAACTTCTATCATAGAAGAAGTGTCAGAAACAATGGATAGAGCAAATGAAGCATTATATGATACGTGTATGGAAAATGATGATTTGTTTGCGAATTTAGCTGAGTTGGAGAGTGACCCAATGAGCTTATTGTTTGAAAAATCGGATGTGAAGAATAATGGAAAGAATTGCAAGGAGGTTGATGATGCATTTGATGATATCTTTGATTGGGGACAGAGTTCATTTGTAGATCATTCAAGTCAGTAGTCATAGACAATTCGATATCAAGATTTAGCAGTTCAGATCTTTGAATGAATCTTTGCTTTGATTTTTCGACCAAAGCAGATGATGTCGTAAATTATTGTTGCCTTCCTATTAATTCTATCTAAAATTGGAGTAAGGTGTATTTTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020571994.1	1.3e-59	probable WRKY transcription factor 14
Swissprot	O64747.1	4.4e-49	WRKY DNA-binding protein 35
trEMBL	A0A4S8KGR2	9.3e-60	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G30650.1	51.45	6e-54	207	AR411;ATWRKY14;WRKY14	WRKY DNA-binding protein 14

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00398	AT1G30650.1	241	86	5	111	326	179	413	51.45	6e-54	207
AfisC2G00398	AT2G34830.1	233	81	4	112	312	178	406	49.79	9e-53	204
AfisC2G00398	AT4G01250.1	185	64	4	120	294	109	269	47.03	2e-35	146

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC2G00398
Allium sativum	Asa5G00099.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	154	211	89.0	1.7e-25

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0007263	P	nitric oxide mediated signal transduction
GO:0009555	P	pollen development
GO:0009626	P	plant-type hypersensitive response
GO:0009739	P	response to gibberellin
GO:0009793	P	embryo development ending in seed dormancy
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0032550	F	purine ribonucleoside binding
GO:0032559	F	adenyl ribonucleotide binding
GO:0043168	F	anion binding
GO:0043565	F	sequence-specific DNA binding
GO:0051607	P	defense response to virus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network