result

Gene information

Detail information of AfisC2G00417

Location

Gene	Chr	Start	End	Strand
AfisC2G00417	chr2	53818496	53822562	+

Sequences

CDS

Protein

Gene

>AfisC2G00417
CGCACGGGGGTAATGACGCTCCAGGAACCATTCAACGCACGAATTATTAAATTGAAATCCAACGACGGTGGAAAAAAGTCGAAAATTGTAGCTAAAAAAAGTAGAAAAATAGCAAGCTAGGGTTTCAATTTCAGATCTGTAGATCCGGGACTTGCGCTTTTGTGACCTACAAATTTTCGATCGAGATCCGAACGAAAGAGAAAAACTACAGAGACAAATCATGAGGAAGAAGCTCGGCACTCGATTCCCCGCTGTAAGTAATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAGAATTTGCAGAAGAGCTGATAATTTGGTTTTTTTGGGATTAAATCTGTATTTTGACTTGGAGAATAATTTTTAATATTTTTTATTACAGAAAGTTGGGTCATTTTTCGATAAACTGGATGTTGGATTGCGATAATATTGCCCCGATGTTGACGTTAATCATTTCTTTTACCCTAAATCTATGTTGGTTAATTAGATTATAGCAAGTATATTTATTACTGGATTTTTGTTTTTTTAATTGTATGTTACTGGATCTTTGGTTCAGATATTGATGATTAGTAGTGGGTGAAACAAAATGGTTAAGCGAAGAGAATATATCGGGAAAAAATTCAGAAAATAAAAATATACTGGGAAAAAATTGAAAAAATAAAACATAAAAGTTGATAAGGAGGGAACTTGTGTTTCTCTATTGTTATTTTATTGAGTTTTCTTTTTTGATCTTTTATTGATTTTTGTAATATATTTTGCAATTTTGTTAAACTTGTTCAAGAAAAAAAAATCTTAGAACATCCGATTTATTTGAAAATCATGGTTTCAATATGAGATTCAGATCATAAATTGTAAAATTCAAATTTCAAATCAAAACGGGATTTAAATCGTTAGATTTTCATATTTTAAGATTTGCACACTTTGAAATTAATTTTGATGTTTAAACTAATAATCTAAACATAAAACTTCATTTTCTCCCTGTTCCAGTTTTATTTTCTTTGGAAAGGATTAGAGTTGGAATTGTAGATCCAAATATATACTGATTATAGTGGATTGAATGATTTTTCTAAACTGCGGTAGTAGCTTGGTTTGAATAGGAGTATAAATGAGAGATTCGATTTGAAGCGGGATTCAAATCGTAGTATTTTAAGATTTTTGACAACAATGAAAACTTTTGAAAAATTTGAATTTTATAAACCATTGACTTTTGTACTTAAAGAAAAAATTGACTATTTTAAAAACTCAAAAATTAACGACAAAAAAAATTACAAAATCAATTTCTGAGTTTTATAAATTGTTGATTTCTTTTTCAAAATCTTGAATTTGATGATTTTCAGAAAGTAATTGTTTTGCTCTTAATATTTTTCGGAACTGCTTAATTATTTATTTGTTTTACTTTTTAAATTTGTCTGAAATTTTGAAATATTCTTATTTGCATTGATTCTTTTTTTGAAAGAATGTTGATTTTATGATATTTTTTTAGGATAGACATCCTTAATGTCACCTTAGCCATTTATTTTGGTTGTAACACTACACTTTCTTAGCCCTATTGTTTCTCCATAATCCTTATATCTAATTAGAACTTGGTTAAGAATTTTGCCAATCAAATCCTGCTGAACTGCTAAAAAAATCTCTATTCGTGAATTTCTGCAAGTATAGTTTGCTGCAAATTCTATTCTTATACGGATATTACTACTTACACCGACATAATCAACAGTTTAAACTGCATCAAATTTTGCTATGCATACATCATAAAGTTACAATGTTATCCCTCTCTCAACAAAAAATATAAAAAATCCTTGCCTAGTCATTGTTCATCTCCTCTTACAAAATTCTGCAAACCCTACTAAATCTGTCAAGCAGTTGAAATTCAGGTAAAAAAATTCTGCTAGTTTGTTATCAATAGGATCGCTTGTAATGCGTTTCTATGAGTGGATGAGCTCAATTTGATTTTCCGTACTGGAAGATCTCGAGATCCACAACCCTTAATGCTGTCATGTCAAACGTCAACTCGGGTCAGTGGTTGGTCTTCGGAGTGGTTTAATTGCTTAAGTTGGTTGAAGTGGGATCCTTTAATTAAAAGGAAGAGCAGTTTTGTCCTGAAATCAAAATTTGAACCTACTGCTCTAGGAAAAGTTATATTGGTACATGAGTATAATTTTCCTAGCTTATATCTTATTTTAGTGAGGTTTAATTGATAAAGACCAAGAATATGCACAAAGTTGAAGTTACTCTTTTTTTTTGTTGTCTTCATCGTTCAGCTTAATTTTTTTTCATATCAAATATATTCTAGTTAATGTTCTAGTCCTTACAACATAGCTTAACTGTAGTGATCTTACTAATTGAAAACTATTTGCGCAATTTTTAATTTGAAATTTCAGCATCAGTCCTCCAGTTAACTCAGTAAAGAAAACTAACCTATATTTTTTACTCTTTATATCCTGCCAGTCACGAATCAAGAAGATAATGCAAGCTGATGAGGATGTTGGGAAGATTGCATTAGCAGTGCCTCTTTTAGTTTGTAAGTTACTTCAACTTCTTACTTTGCTTGTTTATAGACCTTTTTTTAAATCTTAGTTTGCTCAAATATAGTACTAGCATGTTATGTTTCTTTTTCCACTTATCATGTTGCTTTATTACTTTGTGTTTATGAGCTACTAAAGATAATATGAAGCAATCATCTTGCAATTTTATATCGCACTAAATCGACGATATGAATAGATGACTTAATTGAAACTGTATTGATTTTCATTTTTTTCTTTGCTTGCAGCAAAAGCTTTAGAATTATTTCTTCAAGATCTGTGTGACCGAACTTATGAAGTTACTCTGCAAAAAGGTGCAAAGACGGTAAATTGCATGCACCTGTAAGTTCAAATTTATTCTTTTTTTCAAAATACTATTTTTCTTCTTCTTCCTTTTCATTTGACTTATTTTATTTCTTTCAGAAAACAGTGTGTGCAGATGTATAGTTCTTATGATTTCTTAACTGATGTCGTTAACAAGGTACCCACCCTTGGTGGCAGCGAACCTTGTGGGGATGATAAGGGAATTTCACGTAGAAGGTTAAATTTTATTTCTTCTAAAAACATAATACTGCTACAAAAATAGCTGGCCAACTAATTAATTGAAACTTTATTTCAGAAAAATACCGATACCTGATGGAGCTGCTGAAGAAAATGATGAGCTAAGATCCCCTAAAATGGTACATTTTAGGAAAACATCTCACATTATGCTTTTGTTTAATTTCATCTCACACATGGTCTATCATATTTACTTGTAGAAACCTAATATCATTAGCTTAATATTCAATAGGCAACAAGAGCCCCGAATTTGAGCACAAGAGGGAGAGGAGGAAGAGGAAGAGGCCGTGGCAGAGGGCGGCCTCCACTCAATAGAAACATGGAAACAGAAAAGGAACAGACATCAACATATATGAAATCTGAAGACGAACATGACGCATCACCAGAGCATATGGAAGAAGAATCAGGCAGCAGCTTAGTAGAGAAAGTAAACATTACTCAAAATGCAACGAATCCTCCTCCAGTTATAATAGAGGAAAGCAAAAAAGAAGAGCAGACACAAACTTCTACTTGGCCTTTGCATGAAAATGAAGCGGCAAATATGGGGATAGACCCCTCTAGATTTGTAAATTTGAATATGCATATCGATGAGGATGAAGACTATGATAACGAGGATTAAAGGGGGTTAAATTAGAACTTTGTCCTGTTGTATGTATTGCTTCTCTAACTAACTTAAGCTCATCATCCCTCTGCTCTGTAAATTATTTTTGCCTCATTGAAGCACATGGAATTTACGGTAACTCTAGTTTATGAGTTTATGTTTCTGATCACTGTGTTATGTACTTTGGGTAGAAGTGTAGTTGCAGTTGTTATCAAGCAGTCGTATTCTTCTGTAAAAATGGCAGTTGCCTTGGATTCAAAAGAAATCTTAAGAGCTTAGCTTATTTAGTTGTCACTAATATGTGAACTCTGAGCACTTGTTCATGAACAATTCAGAGTTTAGTTGAATTTGCTTTGGA

Functional annotation

Database	accession number	e-value	annotation
nr	AKN63432.1	1.7e-104	nuclear factor-Y
Swissprot	Q14919.3	3.9e-21	Negative cofactor 2-alpha
trEMBL	A0A0H4BGD2	1.2e-104	Nuclear factor-Y

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G12480.1	64.12	5e-43	171	NF-YC11	nuclear factor Y, subunit C11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00417	AT3G12480.1	131	40	2	1	125	1	130	64.12	5e-43	171
AfisC2G00417	AT5G19490.1	126	46	2	1	126	1	123	61.11	7e-40	160
AfisC2G00417	AT5G43250.1	116	69	4	9	123	12	121	34.48	2e-09	59.7

Ortholog group

Species	Genes
Allium cepa	g314071.t1; g339463.t1
Allium fistulosum	AfisC2G00417
Allium sativum	Asa5G00079.1
Arabidopsis thaliana	AT3G12480.1; AT5G19490.1
Oryza sativa	LOC_Os05g41450.1; LOC_Os11g34200.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	8	71	65.7	3.2e-18

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0001047	F	core promoter binding
GO:0001129	F	RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003713	F	transcription coactivator activity
GO:0003714	F	transcription corepressor activity
GO:0008134	F	transcription factor binding
GO:0017054	C	negative cofactor 2 complex
GO:0051123	P	RNA polymerase II transcriptional preinitiation complex assembly
GO:0061408	P	positive regulation of transcription from RNA polymerase II promoter in response to heat stress

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K21752	DRAP1, NC2-alpha; Dr1-associated corepressor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network