result

Gene information

Detail information of AfisC2G00436

Location

Gene	Chr	Start	End	Strand
AfisC2G00436	chr2	56469096	56471011	+

Sequences

CDS

>AfisC2G00436
ATGGATCAGAATTTAGATTCCTCAGAGTTTGTTGAAGTTGATCCTACTGGAAGATACGGCAGATATGATGAAATCCTTGGCAAGGGTGCTTCAAAAATTGTTTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTGGCCTGGAATCAAGTAAAACTCAATGATTTTTTACAAAGCCCAGATGATTTAGAGAGGCTTTATTGTGAAATTCACTTGCTAAAAACATTGAAACATAAAAATATCATGAAATTCTACACTTCTTGGGTTGATGCATCAAACAGGAACATCAATTTCGTTACCGAGATGTTCACTTCCGGTACTCTTAGGCAGTATAGGCAAAAGCATAGGACAGTGAATATGAGGGCTATTAAGCATTGGTGTAAGCAGATATTGGAAGGGCTTCTCTATCTACATAGTCTTCATCCTCCGGTTATACATAGAGACCTTAAGTGCGACAATATTTTCATTAATGGTAATCAAGGAGTCGTTAAAATCGGTGACCTTGGCTTGGCCGCCATACTTCGAAAATCGTATGTTGATCATTGTGTAGGTACACCCGAATTTATGGCACCTGAGGTATACAAAGAGGAATACAATGAACTGGTCGACATATACTCATTCGGTATGTGTGTCCTTGAAATGGTTACATTAGAGTATCCTTATAGCGAGTGCACCCATCCAGCACAAATTTACAAGAAAGTTGTCTCGGGGATTAAACCCGAAGCATTGAATCGAATCAAAGACCCCGAAGTGAGGCAATTCGTAGAGGAATGCTTAGCCACTGCATCTGAAAGACCATCCGCTAGTGAACTCTTAAACCATCGTTTTCTTCAAATTGATGATAGCGACGATGATGATCATGATTTTGATGGTGTTAGTGAAACTTCACATGAGTTCTTTAGCACCAAAGAGAATGACTATTGCTCTTCTCATGATTCTCATCAAGATCGATTTGTTGAAAACAATGGTTGGGATAGTGATGCTCATGATTTAACTATTCATGGAATCAACTTATTCGATAGTCACGAAGATGATCCGATTGCTAACGTAGGTATCACGATCAAAGGAAGAAGAAGAGATGGTGGGATTTTTCTCCGGCTTAGAATTACCGATAATTATGGTAATAATATTTATTTATTCAGTGAATGTTGGTTATTACATCCGTTTAGAGGTTCAAACCTAAAATCCCTAATAATTGTGACAATTATTGCATAA

Protein

Gene

>AfisC2G00436
ATGGATCAGAATTTAGATTCCTCAGAGTTTGTTGAAGTTGATCCTACTGGAAGATACGGCAGAGTAATTTTCATAACCAATCAATTTTTTCATATATTTTCCCCCTATTTTTTGGTTAATTATTATTTTCTAATTCAGTTCAATTTTGCAGTATGATGAAATCCTTGGCAAGGGTGCTTCAAAAATTGTGTAAGTTTAATTTTTAATCTAATTAATTGTCTTCTTTTTTAATTTAGATTTCTATTATTACTCTCTTTTTTTTCTCCATAAATTTCAGTTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTGGCCTGGAATCAAGTAAAACTCAATGATTTTTTACAAAGCCCAGATGATTTAGAGAGGCTTTATTGTGAAATTCACTTGCTAAAAACATTGAAACATAAAAATATCATGAAATTCTACACTTCTTGGGTTGATGCATCAAACAGGAACATCAATTTCGTTACCGAGATGTTCACTTCCGGTACTCTTAGGCAGTAAGCACTTCATTTTCCAAGTTTTAATTTTTTTGATCTATGTTCGCGGTAATGAAGACTCTATCAACTGCAATATGTATAGGTATAGGCAAAAGCATAGGACAGTGAATATGAGGGCTATTAAGCATTGGTGTAAGCAGATATTGGAAGGGCTTCTCTATCTACATAGTCTTCATCCTCCGGTTATACATAGAGACCTTAAGTGCGACAATATTTTCATTAATGGTAATCAAGGAGTCGTTAAAATCGGTGACCTTGGCTTGGCCGCCATACTTCGAAAATCGTATGTTGATCATTGTGTAGGTGAGCTCACAATCAACTTTCTTTAAAGACTCACATTGGAAGCAACTTATTGTTTTCTCTACTTGAAAGCAGTTTTGAATATTAATTTTTAACTAGTTTTAAATGAACGTTAATATATGGAAAGTGTTGGGCAAATAAATTGTAGTAAAATTTGGTTGTACAGATTAAAGTAAGTCACAGTTAATTAATGGTTGCTTATGATATCAACTTATTAGCGATTTATTTTACCTCCTTACAAGCTCTTAGCAAACACACAAAAATGGTAATAAATAACTAAAAAATTGTTTTAGCTACTTATAAGTAGTTGCTAGACATGCTCTAAATGCATACTTCTGAAATTTTTTAATGTTTAGTTTCATAATCTCATATAGGTACACCCGAATTTATGGCACCTGAGGTATACAAAGAGGAATACAATGAACTGGTCGACATATACTCATTCGGTATGTGTGTCCTTGAAATGGTTACATTAGAGTATCCTTATAGCGAGTGCACCCATCCAGCACAAATTTACAAGAAAGTTGTCTCGGTAAGAATTGAAACTCGATAACCTTGACTACCTTTAACTTTGAATTGAAACCCGATACTTTGTGTTGATTAGGGGATTAAACCCGAAGCATTGAATCGAATCAAAGACCCCGAAGTGAGGCAATTCGTAGAGGAATGCTTAGCCACTGCATCTGAAAGACCATCCGCTAGTGAACTCTTAAACCATCGTTTTCTTCAAATTGATGATAGCGACGATGATGATCATGATTTTGATGGTGTTAGTGAAACTTCACATGAGTTCTTTAGCACCAAAGAGAATGACTATTGCTCTTCTCATGATTCTCATCAAGATCGATTTGTTGAAAACAATGGTTGGGATAGTGATGCTCATGATTTAACTATTCATGGAATCAACTTATTCGATAGTCACGAAGATGATCCGATTGCTAACGTAGGTATCACGATCAAAGGAAGAAGAAGAGATGGTGGGATTTTTCTCCGGCTTAGAATTACCGATAATTATGGTAATAATATTTATTTATTCAGTGAATGTTGGTTATTACATCCGTTTAGAGGTTCAAACCTAAAATCCCTAATAATTGTGACAATTATTGCATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257226.1	5.1e-156	probable serine/threonine-protein kinase WNK9
Swissprot	A2YMV6.2	1.4e-150	Protein kinase with no lysine 1
trEMBL	A0A5P1FAF8	3.7e-156	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G04910.1	64.82	1e-147	519	ATWNK1;WNK1;ZIK4	with no lysine (K) kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00436	AT3G04910.1	415	102	7	6	379	10	421	64.82	1e-147	519
AfisC2G00436	AT5G28080.2	387	122	6	6	379	11	395	64.60	1e-136	483
AfisC2G00436	AT3G22420.1	381	112	6	6	379	10	372	64.04	2e-134	475

Ortholog group

Species	Genes
Allium cepa	g180302.t1
Allium fistulosum	AfisC2G00436
Allium sativum	Asa5G00075.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	23	277	174.2	3.1e-51

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0009911	P	positive regulation of flower development
GO:0046777	P	protein autophosphorylation
GO:0048573	P	photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08867	WNK, PRKWNK; WNK lysine deficient protein kinase	EC:2.7.11.1	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network