result

Gene information

Detail information of AfisC2G00709

Location

Gene	Chr	Start	End	Strand
AfisC2G00709	chr2	97140565	97141851	+

Sequences

CDS

>AfisC2G00709
ATGAGCTATTTCTTCCAACCATCTTCCGGCAATATCATCAACGCCGAGCTTGAAAAACACGTCAGACTTTTACATCAGGCCGTCGGTAATGCCAAAGCCGATGACAAGTACATCGTCTTCGGTATCGGCGTCACTCAACTCCTCAACGGTCTAGCCATCGCCCTTTCCCCAAACGATATATCACCCGATGTGCAACCATCAAAAGTTGTCACTGTCGTCCCTTACTATCCCGTCTTCAGAAAGCAAACCAAATTCTTTCGTTTTACTGGCTATGAATGGAAAGGGAACGCATCCGATTGCGTTAACGCCGCTTCTCCTCAAAACATCATAGAATTGGTGACTTCGCCCAATAATCCCGAAGGTCGATTTCACCATTCCATTATCAATGGCTCTTTAGCAATCCACGACCACGTCTACTATTGGCCACATTATACCCCAATTGCTCAACCCGCCGACGAAGATATCATGTTGTTTTCCATGTCCAAATACACTGGACATTCCGGCAGTAGATTCGGGTGGGCGCTTATAAAGGACGTGAAAGTATACGACAGGGTAATGGAGTACATGACCGAGAACACGGAAGGAACTTCCCACGATACGCAACTTCGAACCTTGAAACTAATAAAGGAGATCTTGTTGCAAATGAAAACGAAACAGGAAACAATGGCCGACATCAACCAATTTGGCTATCAAACATTGTCTAAAAGATGGGCTGAACTTACCAGGCTAGTTGCATCTTCAGATCGATTCTCCCTTCAAAACCTCTCTCCGCAATATTGCAACTACTTCAAAAAAGTTAGAGACCCCTCACCATCATTCGGATGGCTAAAGTGTGAATGGGAGGAAGACACGGATTGTGAAGCTCTACTCAGGAATGCTCAAATTAAAACTCAAAGCGGAGTGCTTTTTGAAGCCGATAGTCGTTACACATGCTTGAGTTTAATCAAGACGGAGGACGACTTCGATCAAATAATGGAGAAGTTGAAGCCTCTTGTATCTGCAAAAAGGAGCATTCACCTAATGGAAGGAAGCATGGACTGA

Protein

Gene

>AfisC2G00709
ATGAGCTATTTCTTCCAACCATCTTCCGGCAATATCATCAACGCCGAGCTTGAAAAACACGTCAGACTTTTACATCAGGCCGTCGGTAATGCCAAAGCCGATGACAAGTACATCGTCTTCGGTATCGGCGTCACTCAACTCCTCAACGGTCTAGCCATCGCCCTTTCCCCAAACGATATATCACCCGATGTGCAACCATCAAAAGTTGTCACTGTCGTCCCTTACTATCCCGTCTTCAGAAAGCAAACCAAATTCTTTCGTTTTACTGGCTATGAATGGAAAGGGAACGCATCCGATTGCGTTAACGCCGCTTCTCCTCAAAACATCATAGAATTGGTGACTTCGCCCAATAATCCCGAAGGTCGATTTCACCATTCCATTATCAATGGCTCTTTAGCAATCCACGACCACGTCTACTATTGGCCACATTATACCCCAATTGCTCAACCCGCCGACGAAGATATCATGTTGTTTTCCATGTCCAAATACACTGGACATTCCGGCAGTAGATTCGGGTACGACGGTCTTTTTTATTTTTTCTTCTTCTTAATTAGTAACGTTGACTTTATTTCATATATACCGTCAACGGTGGTCTGCATCATTCATGCATGCTAATTATTAACAAATTACATATTGTATGTACAGGTGGGCGCTTATAAAGGACGTGAAAGTATACGACAGGGTAATGGAGTACATGACCGAGAACACGGAAGGAACTTCCCACGATACGCAACTTCGAACCTTGAAACTAATAAAGGAGATCTTGTTGCAAATGAAAACGAAACAGGAAACAATGGCCGACATCAACCAATTTGGCTATCAAACATTGTCTAAAAGATGGGCTGAACTTACCAGGCTAGTTGCATCTTCAGATCGATTCTCCCTTCAAAACCTCTCTCCGCAATATTGCAACTACTTCAAAAAAGTTAGAGACCCCTCACCATGTATGTTCCTAGCTAGCTACTTAATTAATTTCTCTAACTTTGTTCGTTTATATCTTCAAACCAACTGCATATATACATGCTTAACGCAATTGCTAATTTACATCAATTAATCGCAGCATTCGGATGGCTAAAGTGTGAATGGGAGGAAGACACGGATTGTGAAGCTCTACTCAGGAATGCTCAAATTAAAACTCAAAGCGGAGTGCTTTTTGAAGCCGATAGTCGTTACACATGCTTGAGTTTAATCAAGACGGAGGACGACTTCGATCAAATAATGGAGAAGTTGAAGCCTCTTGTATCTGCAAAAAGGAGCATTCACCTAATGGAAGGAAGCATGGACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	AAK95662.1	7.5e-180	root-type alliinase, partial
Swissprot	P31756.1	2.6e-121	Cysteine sulphoxide lyase
trEMBL	Q94EJ9	5.4e-180	Root-type alliinase (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34040.1	45.56	3e-85	311		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00709	AT1G34040.1	338	169	5	1	333	121	448	45.56	3e-85	311
AfisC2G00709	AT1G34060.1	337	178	5	1	332	122	449	43.03	1e-82	303
AfisC2G00709	AT1G23320.1	341	194	8	1	335	57	384	37.54	4e-66	248

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04864.10	Alliinase_C	Domain	1	331	507.6	1.4e-152

Gene Ontology

Accession	Ontology	Name
GO:0042742	P	defense response to bacterium
GO:0004021	F	L-alanine:2-oxoglutarate aminotransferase activity
GO:0004838	F	L-tyrosine:2-oxoglutarate aminotransferase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009641	P	shade avoidance
GO:0009684	P	indoleacetic acid biosynthetic process
GO:0009723	P	response to ethylene
GO:0009958	P	positive gravitropism
GO:0010078	P	maintenance of root meristem identity
GO:0010087	P	phloem or xylem histogenesis
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0016846	F	carbon-sulfur lyase activity
GO:0030170	F	pyridoxal phosphate binding
GO:0044425	C	membrane part
GO:0044444	C	cytoplasmic part
GO:0047312	F	L-phenylalanine:pyruvate aminotransferase activity
GO:0048467	P	gynoecium development
GO:0050048	F	L-leucine:2-oxoglutarate aminotransferase activity
GO:0050362	F	L-tryptophan:2-oxoglutarate aminotransferase activity
GO:0080022	P	primary root development
GO:0080097	F	L-tryptophan:pyruvate aminotransferase activity
GO:0080098	F	L-tyrosine:pyruvate aminotransferase activity
GO:0080099	F	L-methionine:2-oxoglutarate aminotransferase activity
GO:0080100	F	L-glutamine:2-oxoglutarate aminotransferase activity
GO:0080130	F	L-phenylalanine:2-oxoglutarate aminotransferase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network