result

Gene information

Detail information of AfisC2G00875

Location

Gene	Chr	Start	End	Strand
AfisC2G00875	chr2	117412847	117414214	-

Sequences

CDS

Protein

Gene

>AfisC2G00875
TTTCACTAACCTTGCTAAAAGATACTGCTGCTAAATTTGGTCTATGAGTTATGGAGGTTGGTGTGCTTTGATTATTTAAAGGCATATGAACTCCATTCAGTGTTATGTTCAGAAAGCGATACTCTAAATGATCTACAATATTGGAAAATGAAGAAAGATTGTGAATTCAAAGAGGGATTGAAAAGAGGAGCATGGACAAGTGAAGAAGATGAACTTTTATCAGAATATATTAGAGTTCATGGAACTGGGAAATGGAGAAACTTACCGGCAAATGCAGGTCAGGATTTATATGTTAAATGACAACATAAATTTCAAAGTGCAGTTTAAAGCCTATCATGTCAACATGATAAACTACATGAGTTGCATCATGTGTTTTTTGCATAAGTTACTGCTCTAAGTTCTAAATAGGATTAATACACGAAACAAGTTTATCATAATTTACTACTGTCAGTGAATATTTTTATTTTGAGGTCCGCTTTTCGTTTTGTAGGTTTGAATAGGTGTGGAAAAAGTTGCAGGCTGCGATGGCTGAATTATTTAAGGCCAGATATCAAGAGAGGAAACATAACTGAGGATGAAGAAGAGCTAATTATTCGGCTCCATAAGCTATTAGGAAATAAGTAATTATCTTATTGATGCTAGTAGCTTATTATGTGCTTAAATTTTAGCGGTGATGTAAAGTTGTGATTTATTAAGATGGTACATATCAATATGCAATTGTGTTCACTTTTATTTTTATGCAGATGGTCATTAATAGCAGGAAGATTGCCAGGACGGACAGATAATGAAATCAAGAATTACTGGAATACTTACCTCAAGAAGAAAGTAGCAGGTGAAACTTCATGTCAGCGATCTTCATCAACAGTAAAAACTGTTTTCCCTGAAAAACAAACTGAAAAAATGAAAGAAAAACCAGTCACTAATGTTACAAGTGCCAAGGCACTAAAATGCACAAGATCTATAGTCAAAAATCAGATTCCAGTCTCTACAATGAAACATTCTCCAAAGAATGTTAGTGAAACTCAAACCGATCAACAGACTTCTGATTTCACGTTTAATTTTGTTGGACATTATGATCCTCAATTAAACACAACCAAAGACGATGTGTGGATTACAGAGCTTATGCAGAACTCTGATTTTCATCTACCGTCCAAGGAAAGTTCATACACTAGTCACGAGAGCTTGCATAATATCTATGGAAATGAAACTTCATTTAATGAAGAAATTTACATTAGAGGGTTGTTTAACGGTGGTAAAGTAGAAGAAGGAACGTGTATTTTTTCCTGATTCCAGTTCATTGTACTCGTTTGCTAATGAGGCTGAAAAAACATCACACGTTTAGCCTATAATCTATATATTGCATGTCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244599.1	2.0e-63	myb-related protein 308-like
Swissprot	A0A4D6Q4S0.1	4.0e-53	Myb-related protein 1
trEMBL	A0A8B8Z9E3	1.5e-65	transcription factor MYB1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G22640.1	71.93	1e-46	183	ATMYB3;MYB3	myb domain protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00875	AT1G22640.1	114	32	0	2	115	3	116	71.93	1e-46	183
AfisC2G00875	AT5G35550.1	191	82	3	8	193	11	191	49.21	1e-46	183
AfisC2G00875	AT3G13540.1	111	32	0	5	115	17	127	71.17	8e-46	180

Ortholog group

Species	Genes
Allium cepa	g45598.t1
Allium fistulosum	AfisC2G00875
Allium sativum	Asa5G00939.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	13	60	56.9	1.5e-15
PF00249.28	Myb_DNA-binding	Domain	66	111	59.3	2.6e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006633	P	fatty acid biosynthetic process
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0010023	P	proanthocyanidin biosynthetic process
GO:0010090	P	trichome morphogenesis
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network