result

Gene information

Detail information of AfisC2G00929

Location

Gene	Chr	Start	End	Strand
AfisC2G00929	chr2	125758560	125761411	+

Sequences

CDS

Protein

Gene

>AfisC2G00929
ATGGTGAGATCAGTAAGCTATGATGCAAGCTTAACAAAGGGGGCATGGTCAAGAGATGAAGATATGATTCTAAAGAGTTATATAGAGGAAAATGGTGATGGAAACTGGAAACGGTTGCCTAGGCTGGCTGGTTTGAATCGATGTGGAAAGAGCTGTAGGCTTAGATGGACTAATTATTTGAAACCTAATATTAGGAGAGGGAATTTCTCTGAGGCTGAAGAAAATCTCATTATAGACCTCCACTCAGTTCTTGGAAACAAGTAATTTTTTACCAATAATTTTTTTGTCATAATTATGTGTTATGTATAATCTCTTTTATAGCCAATTGTGTTTGGATAAATGAAATGTTGGATTATGGATGTTGAACGCACACTACTAAAAAAAGCTTGGTTAAAGACCAAAAGTTTCAGTCTTTAAGCAAACATTTCAGTCTTTAAATAACATTTTAAAACCGACTAAAGACCAAAATGATCAGTGACTAATTTGCTAGTCCCAAAATATATTTGAAACTGAAGATTTCAGTCTTAAAATGTAAAGACTGAAAGTCAGTCTCGACTTTATTAGAAACTGAATTTTAAAGACTACAATACGGTTTGTAATCAGTCTTTATATATATATATATATATATATATATATATATATATATATATATATAAAGTGTGTATGTGTGTTTTCGTTAACATATATTAGTTAGTTTAATAACTTCAACCATCTTTATGATTCTATTTCAAAAAATAATAATCCATTATATAATACGGTAATTCGTATTATATTCGTGTATAATCCAACATCAAAAATAAAAATTACAATAAATGTACGAATGGCCTGACTTCCATTTCAATCAAAATACACATCAAGACAATAGTACAATGACTTTCCATCTTACATGCCTTGAGAAGTTGAACCGTACACTATAATTTTTGAGTTTGAAACATACACTAAAATATTCTAGACATAAATCCTTTTATCTACACTATTTTCTTGGTCCAAATCATTAAGGAGAAAAATATTGACGTATGAGCGTTGATTCCAGCTTCAGTCGGGCTTTATATCATACCATCCTGCATTGCGTTATACGGACATGATGAAAAAAGTTGATTTGAGCTCCAACCGGTGGATTACTTCCTACTTCCAATTATTTTTTTCCAGCTATCAAATATGCTCAGCAAAATGAAAACCTTCGTCAGGAGAAAACTAAAACCCATTTATCAAATTAGCTCTTCATGAAATAATCTTCAACTTTTCAAAACCTGTAAGCATACCCAAATTCAACCTTTTGATGTTCTGAATTCTAAATTTTAGGACCTTAAGGAACGGGCATATGGAGAAGTATTCAAATTGAGAACTTTGTGAAAAAGAAGAATTCATCGAAAGTAGAAAATTTAAGAATAATTAGGTGAATCCCAAGCAAGAGAAAATTAGATCTAATTTTGGAAGAACAAATGGCTCTGATATTTATACAGAGGAGTTTTTCCTTGGACTGAATAGAGGAGTGGGGAATTTAATGCATCAAAGGAACAGTTAATTTTGAGTAAGTGGGGAATTATCAGGTGCTGCTAATATGGAGAGGTGGGACATCGTGCTTTAAATAAATTATTCACTTCAATGTCAAATTATGACACGGACCACTAAATTTAGCCATTGGATTTATAATGAGAAAAGAAATCTTAACCACTAAATATTTAGTTATTTAAATACTGATTTGAAACTAAAACTCGGTATCTAATCCATCTAAAAAATTACAATCCAATTAAAGACTAATTTGCAGTCTTTATTACTGAAATCTAAAGACCGATCTATTTTGTCATTAATCAGTTTCAAGACAGAGACCGAAATACTTCAGTCTTTGATTTGCAGTCTTTATATGAATGTTTTTTTGTAGTGGCAGTTGAAGTTATTGAAACATCAAAACCATTTTTCTTTGTAGATATTCCTTTTTAAATAACTTGTGATCAATATGTTGGAAAAAACACAATCGTTATGTTGAAGGAAGTAGGTTTTGTTCCAATATTTTTTCTGAAGGCGGAGTAAGTTTAACTTATATATATTTTCGAAAAAAAAAAAGTTTAACTTATTCTTTTATATGATCATTCTTAATCCATCCATCAAGGTGTTTGTTTATCATCATCATTTAGATCTGTTCACAGTCATGTATAGTAATAATATTCAAGGTCAAGTTTTAGTTTCGACATTTTTTTGTTGATATTATAATTTGAAACTCGTTTTAATTTTCACGAAGGTGGTCCAAAATTGCTTCTAAAATGGAAGGGAGAACAGATAATGAAATAAAGAACTACTGGAACACAACTATCATTAAGAAACTACGGAAGAAGGGAATAGATCCAGTAACTCATCAACAAATTACGGCCGATTTTCATCAGATTCAACCTTTTATGCAACTTCTTCAAACTCTTGTTCATGCCGTTATCAATAGTTCTCTTATTCAAAACATGGAAGCAACGGGTCAACTGCAATCACCCGTTGCTCTTCACAATCTGAACCAGTCATCTTTCAGTTTTCCTCTTGAAGAAACCAACTTTGTTGGTTCGTCGGGATCAGTAATTAATCACGGTGGATATAGTTTGAATGAATTTGTCATAAACAGTGGTGCTGTTGGTGCTAGTACTAGCACTAGTGCTATTACTGATACTATCCAGATTCCAATAGATATGCCTTCTATGCAAATGCAAATGACATCAGCAGCAAATCTGCTAGAAATTCAAGCGTCAGATGTGGTGGATTTAGGTGATTTCACAAGTACAACTTCCTATGGACCAGCTCATGAAGATATAGACTTAGATTTAGACTGGGAAGACCTTTTGAAAGTAAATATTCATTCATATTCTTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240778.1	9.7e-48	transcription factor MYB39-like
Swissprot	Q8GWP0.1	4.4e-45	Myb-related protein 39
trEMBL	A0A5C7GXB2	1.2e-44	Transcription factor MYB41-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G17785.1	58.50	1e-47	186	MYB39	myb domain protein 39

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G00929	AT4G17785.1	147	58	1	8	154	10	153	58.50	1e-47	186
AfisC2G00929	AT5G10280.1	146	62	1	1	145	1	146	56.85	2e-45	179
AfisC2G00929	AT5G16770.2	143	59	1	1	142	1	143	58.04	3e-45	179

Ortholog group

Species	Genes
Allium cepa	g410781.t1
Allium fistulosum	AfisC2G00929
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	13	60	51.8	6.1e-14
PF00249.28	Myb_DNA-binding	Domain	66	109	53.0	2.5e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network