result

Gene information

Detail information of AfisC2G01100

Location

Gene	Chr	Start	End	Strand
AfisC2G01100	chr2	150339755	150341257	+

Sequences

CDS

Protein

Gene

>AfisC2G01100
AAAAACTAAAAGTTCTCTAGACTATATATTAAACTATAAAGTTAAGAATTAAACATAACGAATATATTGAAATGGGGCATCATTCATGCTGCAATCAGCAGAAGGTTAAAAGAGGATTATGGTCACCTGAAGAAGATGAGAAACTCATCAGATATATCTCTACTCATGATTATGGATGTTGGAGTGAAGTTCCACAAAAAGCTGGTATTTTTTTTTCTTGTTTTCTTACTGTTTAAACATGTATATGTAAAAGTTTATACGTAACAATTTTAAAATGTCTGAACATATGTATTGTAGGACTGCAACGATGTGGAAAGAGTTGTCGGTTGAGGTGGATAAATTACTTAAGACCGGACATTAGAAGAGGGAGCTTCACGCCTGAGGAGGAGAAGCTCATCATTAGCTTACATTCTATGGTTGGGAACAGGTCATTATGTTTATTTAATTTGATTTGATTTATCCCCATTTTGATATTCATGTTTCACACAAGTTTTTTGGTACACATGTTTATATGTTGATTTTCACATGGTGATTTTATTTGTGCCCACTTTCAACGTATATAAACTTGTTTCAGTACTCTATATGTAACAGTACCTAGATACAACAATGTTATAAATTGCAATGTGAAACCTACCACTATTAATGTCATGAAGCAACGACTGCACAAATAAACCTGGCAACTAAATTCTTCAGTACTACTTCTTTTTTACTTAAATACTTGGCAACAGATTTACTTGTTACAGAATTGCCTGATACTGAATTTTTATCTGCATGTATATTGTTGTATCAATCAATTGGTAGATGGGCACATATTGCAAGTCACTTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACTCTTGGATCAAAAAGAAAATCGCACGAAAGCCTACCAGTACATCTCGTTCGAAAATTCAAAATCATAATCTTATGATCAGCTCTTCAAATCAACTAAACCTCTTTGAAATGCAAGACTCAACTATGAATTTAGGTCAAGAAAACACTATGTTTCCATTTGTCACTTTTGAAACTAATGTTAGTAACTTCAATATCAGTAATACGAACAACGTGGGTTACACGGGTAATATGATCATGGATGAAAACTATTTGCCACCTTTGGTGGATAATACGGGGCTTACATTGACTATGGGAGATGTGGAACATGAAAATATATTCAGTGGAGGTCAAATGTATGAAAACAAGGAAGAGTTCAGTGAGTATATGGATCAGTCTCAGCACAATATTTGGGAGCAATTTGAAGGGCGTAATGGGGATATTGTTCATGAGTTTTCGCCGTTTATGTCGAATATGGAAACTATGGTTGGGCTATACTCACTTCTGAACAACAAATGCTGATTGTTTTGCTCTATATATATCTCTGATAAAGGGAAGGTGGATCTATGATAATAATATATGAATATATTGCGGTTATTATTATTATTTATATATATATATATATATATATATATATTTCTTTTTTTATAATTTTCTGTTTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017407197.1	1.9e-69	PREDICTED: uncharacterized protein LOC108320319
Swissprot	Q8LPH6.1	3.0e-51	Myb-related protein 86
trEMBL	A0A0L9T9R4	1.4e-69	Transcription factor MYB86

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G63910.1	93.33	2e-66	248	AtMYB103;MYB103	myb domain protein 103

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G01100	AT1G63910.1	120	7	1	1	120	1	119	93.33	2e-66	248
AfisC2G01100	AT3G13890.2	116	25	0	1	116	1	116	78.45	4e-56	214
AfisC2G01100	AT3G13890.1	125	25	1	1	116	1	125	72.80	1e-53	206

Ortholog group

Species	Genes
Allium cepa	g313470.t1
Allium fistulosum	AfisC2G01100
Allium sativum	Asa5G00440.1
Arabidopsis thaliana	AT1G63910.1
Oryza sativa	LOC_Os08g05520.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	53.2	2.1e-14
PF00249.28	Myb_DNA-binding	Domain	67	111	61.1	7.4e-17

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0002213	P	defense response to insect
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009759	P	indole glucosinolate biosynthetic process
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009901	P	anther dehiscence
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0010438	P	cellular response to sulfur starvation
GO:0044212	F	transcription regulatory region DNA binding
GO:0016301	F	kinase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network