result

Gene information

Detail information of AfisC2G01378

Location

Gene	Chr	Start	End	Strand
AfisC2G01378	chr2	191553640	191554688	-

Sequences

CDS

Protein

Gene

>AfisC2G01378
TTTTGACATTAAAACTCTTATCCCGGATACTGAATTAAATCGTTAAAAGAGGAATTTGGATACATGGCCGACTCTGATAACGAGTCTGGAGGTCACAATGCTGGCGGGAACAGCGATTTTTCATCACCAAGAGAGCAAGATCGGTTTCTTCCTATCGCAAACGTAAGTAGAATAATGAAAAAGGCTCTTCCTGCCAATGCAAAAATATCAAAAGATGCTAAAGAAACGGTTCAAGAATGCGTTTCGGAGTTCATCAGTTTCATAACTGGAGAAGCTTCTGATAAATGCCAACGCGAAAAGCGAAAGACTATAAATGGTGATGACCTTTTGTGGGCAATGACCACATTAGGGTTTGAGGAGTATGTGGAGCCTCTGAAGATTTATCTTCAGAAGTACAGAGAATTGGAGGGTGAAAAAGGAAATGCAGGTGGTGCATCTTCGCAGTCGAAAGAAGGCAGCGGAGGTGGCAGTGGTGGAAGTGTAAGTATGGGGAATAATGGGGGTGGTTATGGAAGTGGTGGTCAAATGTATGGTGGCAGCGGTATGTATCAAATGTTTCAACATCAAGGTAGTTTCGGAAGTGGTGGTGGTGGTAATTCATCTTCCTCTAGTGGTGGTATTGGTAGACAAGGAAGAGTATGATGGTTCTTTTGTGTTCTTGTATCGGTAATGTGCATTTGCTTTTGCAACTTTTCTTTTGTTCATACTAGTTTGATGGTTGTAGCCTTGTAGGGTTATTGTAATTTTGATTGTGTATATCATTGGTGTAGTTATGTGTAACATAGTGTAAAGTTGTGATGTTGAGGATGGGTGATGGTGTTTCTGGTTAGAATACCTATATGTGTGTAAAACTGCAAGATGCAGTCTTGTAATATATGAGTGTTCCAGATTGATGATTTGGAAGTACTTCATGAATGGCTGATGTCAAAGGTTGTTTGGTTGATGAGTTTATTCTTTCTCCATTCTGGTTTCATTCGTATGTTGTGATTACTGAGCAACGCATTGTATAAGAGTTGCATGTAACTTGAATCGTTTAAATAGGAGTTAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241990.1	4.7e-59	nuclear transcription factor Y subunit B-3
Swissprot	O23310.1	2.6e-54	Transcriptional activator HAP3C
trEMBL	A0A835RRE5	5.1e-55	CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G14540.1	87.80	1e-60	228	NF-YB3	nuclear factor Y, subunit B3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G01378	AT4G14540.1	123	12	1	1	123	1	120	87.80	1e-60	228
AfisC2G01378	AT5G47640.1	102	12	0	21	122	24	125	88.24	2e-52	201
AfisC2G01378	AT2G37060.3	158	53	3	1	151	1	158	62.03	9e-50	192

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	28	92	97.0	5.3e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005654	C	nucleoplasm
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016602	C	CCAAT-binding factor complex
GO:0019760	P	glucosinolate metabolic process
GO:0032403	F	protein complex binding
GO:0032993	C	protein-DNA complex
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0070491	F	repressing transcription factor binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network