result

Gene information

Detail information of AfisC2G01494

Location

Gene	Chr	Start	End	Strand
AfisC2G01494	chr2	209161365	209164552	+

Sequences

CDS

Protein

Gene

>AfisC2G01494
ATGGAAGCTGGAACTCCTGGGGTGCATGGGCAGAGGTAAAACATAACACATCTAAAATTATATTTTGCATGCCTTACAGAGTGAGTAAATTGCAAAGTTTTGTATACAAGGTTACTTCAGATGCTGGACGTACATGGAAAAAATATGGACTGATACATGTCAAAGATAAAACGCTTGGTGTGATTCAACCAGTTCCATATCAAACAGAGAATGGAACATTACGCATGTTGCTAAGGTCGTTTAATTCAATAGGCATGGTTTGCATGTCTGAATCAGTTGATGGAGGTGTTACTTGGAGCTTTGCAGAACCTACTCAACTTCCCAACCTAATTCAGGTTCAAACATATCATGACATTTCACACAATTGATTACAATAACTCCCTACACTAAACCTTCATATATAAAGTTGTTCATGATAGAAAATTGAACTCAAGGATTATAATAGAACATGTCAAGAAGTGTAAATTGTTAATGAACAGTCAAAAATTAACATGGGATACATGGAAAACGACACATGATACAAACCAGATTGTATGGCATAAAATCATACATCAAGTTTTTGGTTTTACTCTTTGGAATTATCAAAAGGAAGCATTACAAATTAATTGCACTAACATACAAATTGTTCTTATGTTCAGATCTTGAATTTTACTCGAAATAACCTATTTTTTACACTATCACTAGCGATTTTTGATGTGTAGAATTCTGTCCCAAAAGTTTTAGCTTCAATGTGTAGAACCTATCAAAATTAAATACAAATAGACATGTCAACGGATTTGGATTTTTCATATCTGTTCCACATCGAAGACTGTTGTTGGATATCAAATATTAGTATCGCAGATAGTGGTCGGACATTGGATATTATCCTATATGCCTGTATCTAATAGATCAAAAGATATAATATGAAATTTTAGTTTAGCGTGTCATTCGTTGCACTAAGACAATTAGCAACAATGAAACTTTCAGTTACTCTCTCTATTAGTTTTACAACGAAGGAACAGGCTCCGCAAGCAGAAGAAGAAAAACCACAGACTAGTCTTTAGAAAAAATTACAAAACGGCAATATTAAATAAACATTCAATATTGGTTAATACACTTTTGGTTTGGGGCATGTTATATTTATAATAAACAATTGGTTTATGGTTTTAAACAAAATAGTGATTACAACTAAATATACATGTTATTTGACTATTTATGATCCGTTTGACTATGTAAACACAAAATTATCCAATGCAGTATTGTAGCGTTTCTAACATGTGAGATTTGAAGTCCATGTGTCATTCACAAAGAACATAAAGAGGCCTTACAACTAAATATTTATTCACTATGTAAAAGATGGTTCTTATACACGTATGGTTCAAGGTATAAATTAGATTTTGACTGTTTTGTGAGTGCTGACATCAACTCTCAGATTTTTGGTTGGTATTTCGAATTTCAGCAACACAATTTATATGAGTTGATCATAAACAAAGCTAGGGGGAAAAGTGGACCGATAATAATCCTTTTCTATTTCCTACTTTTGATAAATTAATGGATTAAAATGTCAATAATTCATCAAGTTTCCCATTTATGTGAATCATATCTATTATCTGTTATCTGAGTTATGCTCAGCCTACAAACTGAGTTATGCTCAGTTTATAACTGAGCATAAGCTCCAGCATAAGCTATAAGCTATTCTCAGTTTAACTGAGTTACGCTTAGTTTAATTGAGCATAAAATTTATATCTCAGTTATGATTAGCTTATATAAACAGAGCTATGCTCAATATATATAACTCAGTTTATATAAAATGAGCTTATGCCCAGATCTCAGTTTATATAACATGCTCCAATATTAGCATTGATTATTAGTCAAGCAAAGTCAAAAGTGGCTAGATACCAGAACCCTTACCATATGATGAGGTTAGATCTAGAAAATCGATGAGATTAAATATTAAATTTCATAAAAAATCTCACTATATGCTGACATTAGATTTCAAAATTTCATAAACATCCTTCGAATATCATCCAATGTCAGATGATATTAAATATAACGTGTACCCTTCGAATATCTTATTTGCACAGTTCAGATGATAGTTGCTGACACGGTATGAACAGCATACTTGGTCATCACAGATGATACTTAAATATAACTGTTATTACCGACCAGCTTCCATAGGCTTTACCAAAATTTATACATATAAAGCTTTACCGAAATTTTTATGGCATTCGATTGATCAAGTGGTTGACTGGCATTCTATTATATGGACTGTGATAAGTGCAAAGAAGATGCCAATGTATACATATAAAGCTTTATCGAAATTTTTACAATTGATCAGTAATTCGTACTAAAGTAAAAATACTTACACAGGCTTTTGCCGCAGATGGAAGAACTTCAAATTACTGAACTGTTCAAGGTGAGAATAAGCTGATTTAAAACATTCACTTTCCATCTTGAATAAAGAAAGCATACATTAAATAAATCCTTGTATTTATTTGAAAAACAGTATATTACAAAGTAGTAATGTCGCCTAAACCCAACAGTCAACTACAAAGGCCTGGAAAACAATATAACACTATCACAATACACGCACATAATACAAAAAATATCATAATCCTGATGTAGTTTTTGTTCATGTGTTTAGATCTGATAACGAAAATCCTGGAAAACAAAGAAGGCGGCGCCGCGGAGAATCAGTAGAAGAAATCCTTAGAAACTGGAAGGAAGAAAACAAGATAAATGGCATAAATGCTACATTAAATGATAGGAAAGTGCATGCAAAAGGGTCAATAAAAGGGTGCATGCCCGGAAAGGGAGGTCCATTAAATTCTACATGCACATACCGTGGAGTGAGACAAAGAACATGGGGCAAATGGGTGGCTGAGATCAGAGAACCGATTCATGGTAAACACTTATGGCTCGGTACTTACGACACTGCATTGGAAGCTGCCCATGCTTATGACTATGCTCGTGTTAATTTTCCTGATAATTCATGTTCTTTAGAGTCCAACACTGTAAGTTCAGAGAATCAGGGTTCAGTTGATCGGAAACCAAGCATTGAGCATGATCAGGTGAACGAAGTGTTTACAGATGATTCGTGTTCTTTGAAGTCCAACACTGTTGGTTCACAGAATCAGGACTCGGTTGATCAGGAAGTAAGTTTTGAGCTTGATCAGATGATCAGCCTGGATGATATTTTGATACCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	ABY19375.1	5.3e-29	DRE-binding protein DREB2
Swissprot	Q0JQF7.1	6.1e-30	Dehydration-responsive element-binding protein 2A
trEMBL	A9YUA2	3.8e-29	DRE-binding protein DREB2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40340.1	45.71	2e-26	115	AtERF48;DREB2C	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G01494	AT2G40340.1	140	61	2	20	144	8	147	45.71	2e-26	115
AfisC2G01494	AT2G40350.1	121	47	2	20	125	3	123	48.76	2e-24	108
AfisC2G01494	AT1G75490.1	119	43	2	40	142	5	122	49.58	1e-23	106

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	77	121	46.0	4.1e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010017	P	red or far-red light signaling pathway
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0010286	P	heat acclimation
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0034059	P	response to anoxia
GO:0034605	P	cellular response to heat
GO:0042542	P	response to hydrogen peroxide
GO:0043565	F	sequence-specific DNA binding
GO:0045595	P	regulation of cell differentiation
GO:0071472	P	cellular response to salt stress
GO:2000070	P	regulation of response to water deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network