result

Gene information

Detail information of AfisC2G01648

Location

Gene	Chr	Start	End	Strand
AfisC2G01648	chr2	230588200	230590234	+

Sequences

CDS

Protein

Gene

>AfisC2G01648
TGCACTTTTCTCCTCTTCACTTACTACGGTATGATGGTTGTTGCCTTGACTTAAACCCCGACATTGCTGCTATTGTTGCCACTCATTCTAATCTATATGGAATCTGTTCGCTGGCTTCACTGTTCCTCGACCTGTAAGCTTCTTCTAATTCAATATTTAACTGCAGACACACATAATTTTTACTAATATAAAGATAAATATCGGACACTGTGCGTAAACTCCTTAACAAGTTAATAACATGAATAACAATTTGTTTCCTATGATCGGCTGATTTTGGCATTAGATGTGGCTATCCTAAGTTTTGGTTTTAGTATTGTAGGTTCCTATAATTTTTATGAACATCATTGTTTTGTCACACCATAATTTATTTAACAATTTTCCAAAAATATGACTTGATAAGAAAATAATTTCCTAAAAATGTCGATATGGTTTATATATGAATTATTATTATTGTAAATTTATGTTTGTATTGTATTAATGCATTACACAGTTATAAATATAGTGAATTATAAGAATTCCCAAATATATATAATTGGATGCACTCTTAACAATGATATAATTAAATTAACTTCTCCTAGTTTCAAACTAATGATTTATTTCTCTATGGTTATTGTATATGTTTATTTCAGACTCAAACGACATCAAAATACTCGACTAGAAATGATGGAAGTCGTGTTTACGTGGAGGATGAAAATATATCAAGCTGATACCTGGAACTAGACACTTCTCTAAAATTATGTTAGCAGTATGCTCTCTGTGATGATCAGATTTATGCAATCTCTCTGATTCATTTGTTATGCCTTGTAATTTTGTGCTATCCTTTTCTTTAAGCAGTGTCCAATGAAAATGCCTGCCTACTAGAAGATTCCAGCTTTATATATACTCTTGGTTAGAGTGGAAAAAATGACAGAGTATTTATTAGATGTGGCTAGAGGAGTTGAGTACTTGCATAATTTGGCACATCAAAGTTTCATTCATAGACATTTGAAGCCCTCCAATATTTTGCTTGGAGATGATATGAAAGCTAAGGTAGCTGATTTTGGACTTGTTAGACTTGCACCTGATGGAAAATGTTGCTCTGTTCAGACTAGATTGGCTGGAACTTTTGGGTATCTTGCACTTGATATGCAGGTAATTTAACTTTACGATTGATAATATAATATTATGTCTGATCTTGTTCCTAACAATATGTTGTTAGATTCCAGCACTAAATCTCCTACAGACGGTGTTGAAACAAGCATTGCTAACCTTGTCTCCGAGAAGCCCTTCTTAGACAACCTCACCCCTACTAATGTGTTGTTGGATTCATGCTTTAAATCTTCTACAGACAGTGCTGAAACTGGCATTTCAAATCTAAAGGTTTCTATAGCAAATGGTGATCATGTAAGATAACAGAATGCTGAAGGTGACATTGAAGAAGGATAAACCATATTCAGCACTCTGAAGGTTGTGCATCAGAACTAGTCCACTCAAGTAAGGTTGTAATAGACCCAATACCCGTAAATGCAAACTTCATCAACTTGTATGCATCTTTATTGAGAAGCCATCGCTTCAACACAAGGTTGCTAATATCATAGTTTTCATATTGAACATATCTTGTTATTTGCCCGTCTCATAGGTTACTGCAAATGAAAATAGCATGATGTGCTAGCAGCTTTTTTCTCTTTCCTTATCATTTATTTGGAACAATTCATAGTCTCGAGTTAGCTAGAAAGAAATAACCAACAAGATAGTCTCGAGTTAGCTAGAAAGAAATAATCAACAAGATGGATGTCCTTTGTGGGACAATAGTATGCCCTTTGTGTCACTAATCATTTTTTGTGATAGGCAACTTTTGTAAATGAAAGATGCTTTATATGCATGTGCACAAAACTGGCAATGTGAAATCTTTTTGGGTGTACTTAAAACATTTGTTGCTACTTTTTGGTATGTGTGAAAACATATGTAATGTATATTATGTGTTTTTTTGAGCATGTTTAATACAATGTATGTGGATATTTGGTATGTTTGAAATAATGCATTACGTTTATTATTA

Functional annotation

Database	accession number	e-value	annotation
nr	THU49668.1	5.9e-29	hypothetical protein C4D60_Mb06t11960
Swissprot	Q9SIT1.1	2.1e-26	Transmembrane kinase 3
trEMBL	A0A4S8IME1	4.3e-29	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66150.1	86.57	6e-29	122	TMK1	transmembrane kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G01648	AT1G66150.1	67	8	1	6	72	696	761	86.57	6e-29	122
AfisC2G01648	AT2G01820.1	67	8	1	6	72	693	758	86.57	8e-29	121
AfisC2G01648	AT3G23750.1	67	8	1	6	72	686	751	86.57	8e-28	118

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	3	72	50.9	1.2e-13

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0042742	P	defense response to bacterium
GO:0005576	C	extracellular region
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005516	F	calmodulin binding
GO:0005524	F	ATP binding
GO:0005794	C	Golgi apparatus
GO:0007166	P	cell surface receptor signaling pathway
GO:0012501	P	programmed cell death
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009555	P	pollen development
GO:0009631	P	cold acclimation
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0010008	C	endosome membrane
GO:0010942	P	positive regulation of cell death
GO:0046777	P	protein autophosphorylation
GO:0051510	P	regulation of unidimensional cell growth
GO:0052033	P	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
GO:0060862	P	negative regulation of floral organ abscission
GO:0080142	P	regulation of salicylic acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network