result

Gene information

Detail information of AfisC2G01689

Location

Gene	Chr	Start	End	Strand
AfisC2G01689	chr2	242232604	242236400	-

Sequences

CDS

Protein

Gene

>AfisC2G01689
ATGGCATCAAACAATTGGCTAGGTTTCTCCCTTTCACCACATGATCAACAATCTTATGATGATGATGTGTCAGCTAACAATTGCTATGGTCTCCCTACTGCCTCCCCAACTATTCATAGAAGCGATGGCTCTTATGGCATACTGGATGGCTTTGATGGATCCCATCACCACTCTCAAGGTACCCATTCAAGTTTTTAAAAGAAGAAGGGAAAATAATTACATTTTTTAAAATCATTTATAATTATAATCAAGTTACAAATTTAAGTTTGGTTTGATCACATATTGCTTTATTTTAGTTTACTAGCCCTTAATTTGTCAACCTTTTTTATGTTCATGGATCTAGTATTGCATGTTTTATTTTATGATTTTTAATTTTATATTAATTTTTACATTATATATTTGTTTTGATAAATCAAGGTTTCTTCAACATTTATTTTAGTTCCACTTTGCTTTTCTGATTATCTTACTCCAATACTAAATTTCTGGATTTGTTATGCCTTTTTAATAGAATGGAGCATGAATGAAAGCTCTTCAGAGTTATCGATGCTTGTTGGATCAAGCAACAACCATAATAACATTGAAAGCATGGAGCAACCAAAGCTTGAAGATTTTCTTGGAGGCAATTCCTTTTCTGATCACTACTGCTTTCCAACAGCTGAAATGGTAGTACCAATGTCCACTAATAATGAGATAAATGGAAACATTGTGGATGCTAGCGGAGGTAGTACTAGTGCTAATACTAGCGGTAACAATAATAACAATGGTGGAAGTATCGGAATATCAATGATCAAAACTTGGTTAAGGAATCAACCAGTTCCAGCACAGCAGCAGCAGCCTCATCAGGAGAACAAGAACTTGTCGCTTTCAATTAGCAATATTAATCCTCCATGCATTGAGAGCAGTGAGAAAGGTAGTGGGAGTGGACTAGATGCACAAAGTGGTGCAATAGAGGTTGCACCAAAGAAGTCTATTGATACATTTGGACAAAGGACTTCTATTTACCGTGGAGTGACAAAGTATGTATTTTTATTTTTGATTTATCTATTGAATTATACAAATATTGGTAATTTATTTCTTCCATGGATAACATGAATTATGGCATTTCTTTAATTACATTGTAAGAATAGAAGTAACTAGAATTTTTAAAGTACCATGCATGCTCCGTATTTTCCATTCTGATTAGTCATGTATATCCTAATTTAGAATCATGAATTTTTTTACATTTATTACAAAGTATGGTAATTTAATTAAGCAAGTAATTTCATCATCACAGGCACAGATGGACTGGTCGCTATGAAGCTCACCTGTGGGATAATAGTTGCAGACGAGAAGGCCAAACTCGCAAGGGCAGACAAGGTAACTAGTGAATGTTAACAAGTTACTGCTATATATATATATATAATAATGCAATTCACATTTTAATTTACTTAAATTTGATTACTAATTATAATTTTTATTTTCCTTCTTTGGGTGATGAATCGATATCAATGCTTGATTTTTTGCAGTCTACTTAGGTAATTCAATGATGTTTGTTCTAAAATTTATTTTACTAATACATAACTTTTTATTAATTTATCTATTTATTTTTACTGTGCATAAATATGAATAGGTGGTTATGACAAAGAAGATAAAGCCGCTAGATCCTATGATTTGGCAGCTCTCAAGTATTGGGGTACTACTACAACAACAAATTTTCCGGTAATGAACAGCTTAATTTTGAGCTGGAGTTATTTATGATCTAAAAGCTTTTTTAATCTTTTTTTATAGTTGCGTTAAATTTCCTTTTTAACCATTAGATAAGTAATTATGAGAAAGAACTAGAGGAGATGAAGAACATGACAAGGCAGGAGTATGTGGCCTCTCTTCGAAGGTAATACTATTATTATCTATCAATCTTATCTATGTTATATGATTTGAAGCTTATGAACGCATACTAAGTTGAATGTAGACATGAAACAATTCACAAGTTTCGCTATAAAAACCAATTTCTATATTTCATTTCATGCAGAAAGAGTAGTGGTTTCTCTCGGGGTGCTTCTATTTATAGAGGAGTAACAAGGTATCAATTATCTTCCCTCCCTCCAGCTTTAGTTGAAATATTTTGAACATATTCAAAAACAGTGCCTATAGTATATATTTGAAGTTGTATTGTTTCTAAAATATTAAACAGCCAAATAAGCATTATTTTATGGAAAAACATAACATATTCTTTACAATGATTTTATTCGAGTATAACAAATTAGCATATGATTCAGTTGTATGTTATATCTCAGTGATCGGAATTGGAACAAAATTGATCATCAAATTTTTATTCAGACTTCCTCATTTCGGGATTAACCTCTCAATCCTAATCACAAACCCTTGTACTTGCATTAAGTTGTTAAAACATTATATCGTTCTTTTTCTTGCTTTAGCCATCTTAAGCAACCAGTTTTGTTATGATTTCTTAATAAGCACATCATATTTAAAATATATAGTTCAAAATGAGTTTGGAATCAATTTAAAATATAAGCTGAATTGTGGTGTAGGCATCATCAGCATGGAAGGTGGCAGGCAAGAATAGGTAGAGTTGCAGGGAACAAGGATCTTTATTTAGGAACTTTCAGTAAGCACTTTTTCACCTATCATTTTTCATGCATTTCATTATTTATTTATTTTGAAATCTACCATTAATTAACAATCAAGTAGATGTCACAACACATCAAAATTTTGATTTTCTTTTTTCTTCACAATATGCAATACCACTGTGGACTAATTAGTAATTATACAAACGCTTTCAACCTATGTAAAAAATCATGCAACCTTTTGCCAGTTCTTTGGTGCCATTTCAAATTGTTTAAGTGTAAATATTAATACATTGCAATGACTCCAAATCGTGCAAATGTATTCTAGTTACTTTTTAGAGAAAAATAGTTTAATTTGTAATATGTCTAATTTACTGCATACTATTAGTTTGACAATGTAAATCCATAGAATTTGTATTTTGTAGGCTTTCTGTGGAGCAAATAGAAAATAAAAGTCAACTACTTTTACTTGCAAACTAGTGAAGTTTATGCTCCATAAAATACCAATACTTTCAGAAATACTTCATCATAAGCTCTATTTCCCAAATATCTGCAGGTACTCAAGAAGAAGCAGCAGAAGCATATGACATAGCCGCCATAAAATTCCGAGGCCTGAATGCCGTCACAAACTTCGACATGAACCGTTACGACGTAAACAGCATTCTCGAAAGCAGTAACCTTCCAATCGGCGCTCATGCAAAACGCCTAAAAGAACTAAACTCGTCAAACAATATTACCGCTGCAGGCAGCATCATTACTTCTCCAATAATAAGCAACGACGCTATAAATGCATATCAGCAAGCTCAAGCCTACAACCAATACTACTCCAACTACTACAACAGTCATCAAGCCACCAGAGACCTAATGTGCAAGCAAGAAGAGCTTCAGTATGCTGCACATAACTTGCAAGAGCTTCACCTAAGCAATGGAGGTACTCAGTACAATTTCTTTCAGCCCTATAATAACATGATGGGCCTGGACTCTTCTTCCTCTTCGATGGAGCATAGCACTGGATCGAACTCCATTGTTTATAATAATGGGAACGTGTACCATAATGCGATGCCAATTAATGCGAGTTATGGGATTAGTGCACAAGTAGATAATAATAATAATGTTGGGTTCGATCAGAGTGCTTGGATGGGGAACTCGGTGCATGGGATCGATGAACAGAGAAGCAGTAGTACTACTAATGTTGGTGCTCCTCAGTTCTCAGCTTGGAATCATGAAGAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008791735.1	2.2e-139	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q8LSN2.1	9.2e-111	Protein BABY BOOM 2
trEMBL	A0A8B7C4P5	1.6e-139	AP2-like ethylene-responsive transcription factor AIL1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G17430.1	50.79	4e-119	425	BBM	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G01689	AT5G17430.1	506	172	12	4	469	5	473	50.79	4e-119	425
AfisC2G01689	AT1G51190.1	425	133	12	1	406	1	377	52.94	2e-108	389
AfisC2G01689	AT3G20840.1	429	125	12	1	406	1	368	51.28	2e-106	383

Ortholog group

Species	Genes
Allium cepa	g142976.t1
Allium fistulosum	AfisC2G01689
Allium sativum	Asa0G05798.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g40070.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	222	278	29.6	5.5e-07
PF00847.17	AP2	Domain	321	372	38.7	7.8e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009873	P	ethylene-activated signaling pathway
GO:0010073	P	meristem maintenance
GO:0010093	P	specification of floral organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019432	P	triglyceride biosynthetic process
GO:0019827	P	stem cell population maintenance
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048316	P	seed development
GO:0048481	P	plant ovule development
GO:1901959	P	positive regulation of cutin biosynthetic process
GO:1904278	P	positive regulation of wax biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network