result

Gene information

Detail information of AfisC2G01734

Location

Gene	Chr	Start	End	Strand
AfisC2G01734	chr2	250128524	250131049	-

Sequences

CDS

Protein

Gene

>AfisC2G01734
ATGTTATTGTATAGGGCTTGTTGGCTTATCGATGGAAGGAGAATTGCAAGAAAAGTAAGAGATGCTTCTAGTTTTTCAAAGTGCCAAATCAAAGAGCTTGGAACCGAAGCACATCGTGAATGCCCTAACTGCAGTCATATTATTGATAATAGTGATGTAAGTTATCAAATGAATTTCTTTAAAACTACTACATTAATGGCAGCAAATCATAACTGATCCCATTTCTTGTTCAATTGCAAATTGTCATTTCAGGTTTCTTTAGAATGGCCAGGTTTTCCTGCAGGTGTTAAGTTTGATCCAACAGACATCCAAATTCTTGAACATTTAGCAGGGAAAGTAGGTTTGCCTAATTCAAAATCTCACATTCTCATTGATGAATTTATACCAACTCTTACAGAGGAGCAGGGAATATGCTATGCACACCCTGAAGACCTACCTGGTAAGCATTTGATCGATACGTCATAACATATATTTTTTCATTTTATGACTGCATTGCTCTGTACATGCTTTGACGAGAGTGTGTAGATGAATGTTGTGTTAGTTTATTCTCATGAACTGGTCAAAAATTGATGCATCAGGTGTGAAAAATGATGGAAGCAGCGTTCACTTCTTCTACAGAATATCCAATGCATATGCAACAGGCCAACGAAAACGTCGTAAAATTGGTAATAAAGAATGCAGTAGTGCTTCTGAAGAAAAAGCGAGGTGGCATAAGACTGGGAAAACTAAACCTGTTATAGACAAGAACAGAAACCAAATAGGATGGAAAAAGATTATGGTTCTGCATCAGAGTTTGAAAAAGGGAAGTAAACGGAAGAGTAGAGCTGATAAAGCTAACTGGGTAATGCATCAGTATCATTTAGGCACAGAGGTAGAAGAAAAGAATGGAGAAATGGTCGTTGCTAAAATATTTTTCCAGCAAAATAGCAAGCAGAATGATAAAGTTGATGCTGAACTTTCTCGCGAGGAGCCTATCAATGTTGCATGTGGTCCAAGAACTCCAAAAATGGTTACACCTCTGCAGCCCCGTAAAGCAAAACAGTCACCCATGTCTGAAGCTGAGTACAAGGTATCTAGTCTATAACTTCTAAATTCATCCGGTTAACTTATCATATAATTTATAAGTTACTTCTCCTATAACTTTATCATGCACACATATTACTTCCAGCATCAAATATCCTTCAGAAAATTTGTAATGCTATTAACATCCTTGGTTGCACTACACCATAATGTAATTTGGTTTAGAAGTTGGTGAAAAGAAAAGTCCAGTTTTGATTCATAACATGTTTAGCAAGTTCTTATAAGTAGTCAAAACTACTTACATGCAACTTTTCTAAGTTTCTGGTGTTTTAAATTTCTCAAGGAATTTTGCGGAAGTAGTTTAGAAATAGAAATTCAGGAAACAACTATTTTTGGTTTACAAGTCGTGGACAAATTTCATGAGAATGTTAACAGTCAATAAAATAGCAGCGTCGTTTCATAACAAGTACATAAATATGTCATGTTATGTATAATTTGTTGTACATTCATTACTGAAATTTGCAAACGAATGTCTTCTTTTTCCCCAGGAAGAGGTGATTCCACAATCAGTAGTTAACAAAAACGATGAAGGGAATTTCCTCTTGCTTGCAGGAGAATCACAAGCAGTCGATGAATTCAACCCAATACCATTGGATGAACTTCTGTTCTGCCATGAAGTATTTGATAACTCTGCACACACAAATGATGCATCTTTTTGCAACAATGAGCTGCTGAATACAGACGACCTCAACTCCTCCAACCCCTTTGATGATTTGAATAACATACCCCTGGGCACACCTCCTGATTTTAATCTTGCGGTAAATATGATTTATCAAGAAATTTGTTTCACTATTTAATTTTCATGGTGTTTATATGCGTAAATCCCTTTTTGGTTGATGCAGGATATACAATTTGGTTCTCAGGACAGCATATCTAGTTGGTTGAATCGAATGTAGTTATGTTGACGAGCTAAGCAGAGTCTAATTTTGTCTTTTCACCGATTGTGAATTGTGACTCTGTTCTTCAGCATTTTGAAATTCCTTGGGCAATTATGAACAATAAACTTCTTTGTACTTGATTTTCATTGTGAGACAGTTGAGTATGTTTGAATGTATGTAATATAAGTTAAATGATCATGCGCATGGATATTTGACCTACTCTTGGTCGTTTCTATTAATTTTGGGGATTACGGTGTCAGCTTATCTACAATTGCGTTTGTTGGTCGTTTGATTGTCATTTTGATAGTCATGAGTTAGTCTAGGGTTGCAAGAGGTAGAAACAGAACTATTTTGGGGATTGCTGGAAGTAGGAATAAAATTGGCTGGGTCCATGTAAAGATAAAATTTTACAAGTAACTGGTCATCTAATTATATAATTTGAAAAAAATATTTGTTTCATTTTTAATTTAATTTCAATATCAACAATTATATTATTATAAAAAGTCCATTTGCATAGACAAACACCATTGCCCCAGTTAATTTTGTATAGCAGGTTGCAATTGTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246883.1	3.6e-111	SUPPRESSOR OF GAMMA RESPONSE 1-like
Swissprot	Q6NQK2.1	3.0e-62	SUPPRESSOR OF GAMMA RADIATION 1
trEMBL	A0A5P1E849	2.6e-111	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25580.1	48.50	3e-64	242	ANAC008;SOG1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G01734	AT1G25580.1	266	115	6	8	267	6	255	48.50	3e-64	242
AfisC2G01734	AT3G01600.1	371	186	10	7	365	4	350	40.16	5e-62	234
AfisC2G01734	AT5G14490.1	263	118	7	3	265	4	250	49.05	5e-62	234

Ortholog group

Species	Genes
Allium cepa	g174519.t1
Allium fistulosum	AfisC2G01734
Allium sativum	Asa5G01429.1
Arabidopsis thaliana	AT3G01600.1; AT5G14490.1
Oryza sativa	LOC_Os02g38130.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	61	209	46.2	5.8e-12

Gene Ontology

Accession	Ontology	Name
GO:0000077	P	DNA damage checkpoint
GO:0005634	C	nucleus
GO:0010332	P	response to gamma radiation
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0040020	P	regulation of meiotic nuclear division
GO:0043565	F	sequence-specific DNA binding
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network