result

Gene information

Detail information of AfisC2G01915

Location

Gene	Chr	Start	End	Strand
AfisC2G01915	chr2	276200559	276203567	-

Sequences

CDS

Protein

Gene

>AfisC2G01915
AGAAAACAACGTTTTCAACTTACAGTACGGGTACAAAATAACTTGACTACAAGGAACATATCATACAAAGTAAGAGTGAAGGATAAGGTTCACTAAAAACTCCAAATCTTATCCCTCTCTCACTCACTTTCTATCTTTATCTCACACTCACTCTATCCTTTTATCCGAATTCGTAACCTTATATTCTCAAACTTGAGGTCATCAACATTTCAGTGTACTAAAATATCGTTTTTGCATGTATCTTCATTCATGTCTTTGCATTGCTTCATTTCAGTATTTTCATAGTCCATTCTCCGCTTCATCACTGTCACTTGAAGGAACTTTTGTGCAACAAAGATTTTAACAGTAGTGCAGTCGATTTGCATTCTTGTGTTATCATATCAAGTAGAATTTATAAGGATCATACACTTTCCTCTTTATTGAACAAAAGCCAGGGAAAAGAAAATATGTGTACTGTGTTATTCCATTCCCTTCTCATCTTTTTTTCCTCTTAGAATTAGATACCATTTGCAACAAAAGCTCAAATTCTACCATATAGGTCTCTCTTTCATCCAAATCAACTCAAACACAATATGCCTATTCTGCCTCTTTATTCATCTAGAAGCATTTTTTGGTCCACTGATTGTTCATTTTAAGCTCTAGCACATATAATTTTTCGAAAGCAATATCAGCAATATACTGATCATACAGAAATCAAGCAACAAGTACCTGAATAAATTTTCTGCATGGAGAATAATAACCAACAGCCCCCACAGCAGCAGCCACCACAGCCGCCGCCGCCGCCACACACATATTCAACTCCATTTCATCACCTGCTGCAGCAACAGCACCAACAGCTACAAATGTTCTGGAACTATCAAAGGCAGGAAATAGAGCATGCAAATGATTTCAAAAACCATCAGCTTCCTCTTGCTCGCATCAAGAAAATAATGAAAGCAGATGAAGATGTGAGAATGATATCTGCCGAAGCTCCTATACTATTTGCCAAGGCTTGTGAGCTGTTCATCCTTGAACTAACTATTAGGTCATGGTTGCATGCAGAAGAAAATAAGAGGCGCACTTTGCAGAAGAATGATATTGCTGCAGCTATTACAAGAACTGATATTTTCGACTTCCTAGTTGATATTGTGCCTCGAGAGGAGATAAAAGAGGTAACTTGTTTTAACTTGATGATGATAACTGATAGTGATTATCAAACTGCGCCACACCTTGATGATGGCACAACCTGTATACAACAGTTGATCACAGCAACTGGAGGGTGTGGTAATAAATACTTGAGATTCATGTGCACTTCAGTAAATCATAGAACATTTTCAACAATCAAATCAAATAATATTAACAAAAAAAAGGTAAAACAATCTAATTGCATAGTGATATAGAATTCACTAGTTATCTAGTTATCATGCAAGCAAAATTTAAGAGTTGACTGTTGCTTCTTGTTAACCAAACACTTGTGGTATTAATTTTGTTGCATCTTAACCATTATATACATACAGGTCCTATCACCAAAATGAAGTTCAAATTTAAAGAAGAGGAAATTAGTTTAAAGGAAAAAATCTAAAACCAATTTTAGTCTGAAGGACACAAGTTCTAAAATTTAGTCATATTGGATACTATGTTAATATAGCATCAGAAAAATAGAATGTGAAATTAAACTAGCATCAGAAAAATAGAATGTGAAATTAAACTAGCATCGGATGAACTATACTAGACGAACTAAAATAGCATTCATTTTCACAGTTAAAGAAATGTCAAATTAATATATCATCACACGTGTACAATGCTAAGGTCATATACGTTACACATTTATAATGTTAAGTTCATATAGCATTCATTTTCACAGTTTATATAGCATCTATTTTATCTTATGCTATATATTAATATAGCATTCGGTATCATCCGGACTAAATTTTAAAACTTGTATCCTTCGTTCAAAAATATGGCCGAAGTTTTTTCTTTCTCTCTATTTTCCTATATAAATAATTACTAAACGTGGAAACTCCGGGTTGCATGCCTCTACTTTCAGTCTGACGTGTGAACCTACAGTGATATATGTTCTTACCCATTAACAGTAAAAGTTCATAAATGCTAAATTTATTTAGGCACAGAGTTAGCTGTTATACCTCAACTTTCAGATGAGACATCGCAGACATCAACGTCCAGACCGACTTGCAACTAATCAGAGATAGCCAGACTAATCGTCAGTGTTATTTTATCATTAATAAATACTTCATATACCACTTCATGTCAGGATATAAAAACTTAAACCCAGACTTATAGACTACTAGAGCCCCAGATGTATAAACACATCACACATGCATAACCTGGATATGAATTCTAACAATACACACGCCACGCGCACACAACACGCGCACGCACACATTTGTGTGTGTATAGTAAAATAACTAAATGTCCTTGATATCAGGAGGAAGGAGCAAGTGGAATTGGAATGATGGCAGGAGGAGCAGCAGCAGGAGTTCCGTACTACTATCCACCAACAGGGCCAGGAGTAATGATGGGACAACCAGCCATGGATCCAAGCATGTACATGCCACAGCAATGGCAGCCCATGTGGCAGCAAGGCATGCCAGATGATGGTAGTGGAAATATGTATAGTGGACAAGGGTATTCTGGTCATTCTGCACCACAGTCTCCACCACCATCTTCGGGTTCTTAGTGGTCAAATTGGCTTCTATACTAGAACGTACCTTGTAATTTGCTATATTTTAATGAAATTAGATTATTCTCTCATGAGCTATACAGGGGTGTCTTCTTGTTCATCGTTTTTATGACAAAGTTGAAAGAGTTAAAATTTTGGTAAGGGTTGAAAGTGCGATGTTTACATGACCACGGGGAACAACTTGCTTTATTTCTTAGTTCATAAAAATTATGTCCTACCAAAAGAAAATATGTCATAGTAATGTCGTTTTCAAGTACGTAATTTATTCTTGTATTTAAATAGTTGAAATTTAACTTTTAACCTCACATATTTCCCATAGGCATAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008798939.1	6.3e-63	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0.1	1.2e-61	Transcriptional activator HAP5A
trEMBL	A0A8B8J7Z8	4.6e-63	nuclear transcription factor Y subunit C-1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G63470.1	75.51	8e-71	263	NF-YC4	nuclear factor Y, subunit C4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G01915	AT5G63470.2	196	30	5	16	193	29	224	75.51	8e-71	263
AfisC2G01915	AT5G63470.1	196	30	5	16	193	29	224	75.51	8e-71	263
AfisC2G01915	AT3G48590.1	184	34	4	27	199	33	216	75.54	6e-69	256

Ortholog group

Species	Genes
Allium cepa	g298262.t1
Allium fistulosum	AfisC2G01915
Allium sativum	Asa5G01679.1
Arabidopsis thaliana	AT3G48590.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	59	122	73.1	1.5e-20

Gene Ontology

Accession	Ontology	Name
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003713	F	transcription coactivator activity
GO:0006457	P	protein folding
GO:0005829	C	cytosol
GO:0005654	C	nucleoplasm
GO:0008134	F	transcription factor binding
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0016602	C	CCAAT-binding factor complex
GO:0032993	C	protein-DNA complex
GO:0043457	P	regulation of cellular respiration
GO:0046982	F	protein heterodimerization activity
GO:0048586	P	regulation of long-day photoperiodism, flowering
GO:0051247	P	positive regulation of protein metabolic process
GO:2000905	P	negative regulation of starch metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08066	NFYC, HAP5; nuclear transcription factor Y, gamma	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network