result

Gene information

Detail information of AfisC2G02006

Location

Gene	Chr	Start	End	Strand
AfisC2G02006	chr2	287996775	287998495	+

Sequences

CDS

Protein

Gene

>AfisC2G02006
ATGAACCCAAACCCAGACTTTTCAAATATTTCCCCCGCCACCGTCCAAAACATCCAAAATTTCGACGGAGCCTCATCCTCCCGCCTTCCCCAACCCCAATCACAAGCATGCGCTTCTTGCAAATTCCAACGTCGGCGTTGCAATCCGGATTGCCAGCTGGCGCCCTATTTTCCTGCGAACGAACAAGACCGATTCCTCGCCGTGCATCGACTGTACGGGGTGCGGAACATGTTGAAAATTTTGAACAAGCTGGATCCGCTCCATCACGCAGACGCGATGCGGACGATTATTTACGAATCCGAGATGTGGATCCGGTACCCGGTTAGCGGGTGCTACGGGTTGATCTGCGAGTTGATTGGGTATCATGAGCATTTGATGAGGGAGCTTTCTCTTACGACGCAGCAGCTTGAGTTATGTAGGGCGCAGCAAGTAATTGGAGGTGGCCGAGGCCATGGACGGCATGAGGATTATTTCTCGTTTGATGGGAATGATGATGTGAATAATGTTGATGTTGGTGTTGGTGCTGGTTTCGGTAATGGGAATGAGATTGGAATTGGAATTGGAATTGGAAATGGAAATGGTTTTGGTAACCAGTACGATGTTGGAAGTGGTGATTATAGTGGTAATGGGGTTGATATGGGTTTTTCGAACTTGAGGCGGGAAGAAGATAATAGGAACGCCTTGGTTATGTTGAATGAGGACGTCGATCAGAGTACATCGAATGCTGTTGCTAATGTTGATCGTGGAGATGGATCTGGAAATGGTGTTGATTTTGATCATGCAATTGGTTCTGGAACATATCATTACAGGTTAGATTTTGATCAACGGTTTAAACATCAAGATCACCTTCTTCTTTTTTCTTTTTTCTTTTTCATTCATTCTTTCTTTTTCTTCTTGAGGGTTTTAGAAAACAAATAATATTTGAAGTTTATAACAATCAGAATGTAAAATGCATAATTTGGAAAATTATAAACTTAAAGAAATTGAAATAAGGAAGATTCAATTCTTGAAAATTCATATCATCAAAAGATCTTAAAAATTAAAATACACTTGTACTTATCAAAAATTCGAAGTATGTATGTATTAAAGTTGTCTGGGATTTACGCACAATGTATTTTTTCCATCACCATTCTTTTTATTTCTCACTTTTATTAAACATGAAAATGTAGTGGATAAAAACTAATTAATATTATTAGGCTTGAACCTCAAACATCTGAAGAATGTCATTATTTCTGGTTATACAATTTTGTAAAATGAAATAATCTCAGGAGTCCACATACATCATTTGTTTATTTTTTTTACGTAAAGTATGAATATAAAATTGAATATCAGTAAATTATATATTGTCAAACAATTGACATGATAATGTATTAAAGGCAATTTACAAATTGGATTAAGAAAGGTGAAATATGATTGATATAAATTATATTAAAAAAAAGAATATATTTTAGAATCTTAAAAAGAATCAATACACAGAACAACTTTTGTCTTCATATTTGGATCAAGCTCATGCATGAAAATTTTGACTGCAGTTCTGAAGAGGCAAGAAATGGCAACGTAAATTCAATGGGGCAGATGATTCAAGAACACGATTTGAAGGGCGCAGCCTCTTTGTTTACGCTGAGGAGCAAAGATAACTCTTACCTCTGATTCATTACTCTTTGTGTGTTGGTACAGATGTTCATAACCTGTATTAATTATCGACTGACCATCGAGAGCTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010924994.1	6.3e-29	LOB domain-containing protein 6 isoform X1
Swissprot	A1YKY7.1	6.1e-21	IG1/AS2-like protein 1
trEMBL	A0A6I9RDW8	4.5e-29	LOB domain-containing protein 6 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13850.1	35.11	2e-25	113	LBD22	LOB domain-containing protein 22

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02006	AT3G13850.1	188	110	4	35	219	35	213	35.11	2e-25	113
AfisC2G02006	AT3G47870.1	106	55	0	36	141	36	141	48.11	9e-24	107
AfisC2G02006	AT2G23660.2	103	61	0	34	136	3	105	40.78	1e-20	97.4

Ortholog group

Species	Genes
Allium cepa	g468787.t1
Allium fistulosum	AfisC2G02006
Allium sativum	Asa0G04763.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	36	132	117.0	3.4e-34

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005654	C	nucleoplasm
GO:0009536	C	plastid
GO:0009556	P	microsporogenesis
GO:0009786	P	regulation of asymmetric cell division
GO:0009799	P	specification of symmetry
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0048441	P	petal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network