result

Gene information

Detail information of AfisC2G02008

Location

Gene	Chr	Start	End	Strand
AfisC2G02008	chr2	288319876	288322536	-

Sequences

CDS

Protein

Gene

>AfisC2G02008
CCCCTACTCCATAGCTCTCGCATCTCCTCCCATTAACACACATCTTATTAACAGTACCCACAGATCCATGAGCAAAATCACAAACAACTCAAACACTCCTCACACCAACAATCAACACCACCACCATTCCTCCTCCTCCTCCTCCCGCACCTCCTCCTCCACCACCCAAGCATGCGCCGCCTGCAAGTACCAGCGCCGCCGCTGCAACCCCGACTGCCAGCTCGCCCCTTACTTCCCCGCCGACCACCAGCGCCAGTTCCTCAACGCCCACCGCCTCTACGGCGTCAGCAACATCCTCAAAATCCTCAAAAAGCTCGACCCTTGCTACCACGCCGAAGCCATGCGGACCATCATTTACGAATCCGACACCCGCGCCCAGTTCCCAGTCGGCGGCTGCTACCAGGTCATCCTCGACCTCAACCGGTTCTGCGAGCATCTAATGAACGAGCTCGCGATCACCGTTCATCATATAGAGCTGCATAGAGCGCAGCAGGCGCTTGTAATGCAGCAGAGCGATGAGATATATGGGAACGACGTCATGGCTGCACAAGCGCAGCAGGCACAGCAGCAGCAGCAGCAGTGTTTTGATTATTTCTGCTTTGATGGGAATAACGACGACGTGAATGGATTAAACGTCAACATTGGAAATGGAAACGGTAACGGTAACGAGAGTGAGATTAAAGGGAACGATTCTGGAAGCGTAGGGAATAATTATAATGCAGGGAATGGTGGTGAGGTCGATGTTGATTTCTTTAACTTGCAACAGCAGAATAATAATAACGGTAATGTGGTCGTTGATGATGTGAAGCCATTGATAGATGTGTTTGATATTACCAATGCGTTGGATATTGTTGATGAGGACGTGGGGGAGATTACGTCTAAGGTGGCTGATATTGATATAATTGCAGGATCAGCTTCTTATCAATGCAGGTTAGGTCATATATACAATAACAACCAACTCTATCTTATATTTGATTCTTTAATTTGAATTAATGGAATTTTTTTAACAAATTTTATAGAAAATTTTGATCTATGTTTTGGTTTTGTTGAATGAAATGTATATATTTTAACTAATAAAGGAAATTAAATCTGCATTTGCAACCGTACAATAATTGGTTGAATGTTTAAACTTTAAACTGTTTGTGATAATATATCTGATTACTATCACGATCACATTTATAATTTAAGCTGAGACTATGAAGAAAACTAAAGATTTGAGAAAAGTAGAATTAATATGACAGGGATTTTGGTGGGGATATTATCTTTCTTTGTCTTTGCTTTATCAACATTCCAAGAAACTGTTAAACACCTAATCTGAAAATCGATGGTTATTATTTGACTTACGAAACAAAACACTATATTGTTATACTACAATTTGCAATTGCACACGGTGTTCCCTTTAAATAATGTTATACTACATTGTTATACTATATTTTTACAATAAAATATGACAATTTTATAGTTGGCAGACGTAGTATTAGTATTACGAGATACTGGCTTTTGATATACGTACCAAGATTTGCTATGATCATGCCGACATCCCTCAAACTTACGAGCAAATCCTGATTGATTGTAAACTGCATTATGCACTGGAAACCCTCAATGCTTCATGTTAACTAAAACATGCTATCGTAATAATGCAGAAACAAACCAACCCCCACCTCCCCCACACGTGCGCGCACACACAAAAAAAACGCACACACAACAAATGCTAGTTTCGCACTTCTAGAAGGGCGAGATTCACGAGGAACACACAATAATTTGATTGATTGTAAACTTTATTATTTAATTTTTTTTAAAATTAATGGAAGTTTGGTAGTTTACAATCAATAATATTGTGATGACTATTAAAAGGGTGTGAGCTAGAATTTCTCATTACTACCAGTTTTATGAAACAAAATCATCTTAGAGCTCCCAACTTGTGTCCATGTTTTATTGAAATGGGTTATTGATATGAATACAAAGTTATCTTTCAGTGAATTTTGTATTCTGAAACTACTGACGTGTATTACAGTATTAGAGTAAACTTGGTATTCGGTGCAAAAATTATTCTGGTAAAAATCAAAAGCAATTATTTTGAGCATGTTGATGAATAGTTTAGCAGGCATAACAAGACCATCTTCATATCTGGGTCATAATCATGTACATCTAAATTTTGACTGCAGCTCTGAAGAACCAAGGAAGGACGAAGTGAATTCAATGGGACAGATACTTCAAGAACATGATTTGAAGGGCGCGGCCTCTTTGTTTACTCTCACAAGCAGAGATAGTTCTTACGTATAACGCTTTCTTCTCTTTTTACTCTTTTTTACTTTTTTTGCCTGCAGTTTGGTTTCCAGGCAAGTGTTTGCCGTTGTTGATATGTGCATGTGCTATGTTGTTATGGGCGGAGCAGAACGCCAATTAAGCGTTACTGTTCCTAAAAGTTCAAGGCATAAACATGGGACACTATAAAATGCAAATGGGTGATGTAACACCATTATGTGGAAGACAGTTCTAAAGTAGAGCTTTGGTGAAGCGCAATAGAACTCAAACGAAGCCTTTAACAGCATAGACATGTACCTTTTCAATAATTAACAATAGAGAGTTTTTTCTGTTGTAATAATGCTAATGTTAACATGAGAATGTTTAAACAAGTTTGATCGACATTTTTTAATGAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008779803.2	5.4e-31	LOB domain-containing protein 7-like, partial
Swissprot	Q9LRW1.1	2.6e-22	ASYMMETRIC LEAVES 2-like protein 30
trEMBL	A0A8K0N2R6	4.6e-32	LOB domain-containing protein 11-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13850.1	57.55	7e-31	131	LBD22	LOB domain-containing protein 22

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02008	AT3G13850.1	106	45	34	139	35	140	57.55	7e-31	131
AfisC2G02008	AT3G47870.1	109	56	32	140	33	141	48.62	2e-25	113
AfisC2G02008	AT1G72980.1	117	63	24	140	2	118	46.15	3e-24	109

Ortholog group

Species	Genes
Allium cepa	g518346.t1
Allium fistulosum	AfisC2G02008
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	35	130	117.7	2.2e-34

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009536	C	plastid
GO:0009556	P	microsporogenesis
GO:0009753	P	response to jasmonic acid
GO:0009786	P	regulation of asymmetric cell division
GO:0009943	P	adaxial/abaxial axis specification
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0048441	P	petal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network