result

Gene information

Detail information of AfisC2G02040

Location

Gene	Chr	Start	End	Strand
AfisC2G02040	chr2	295202341	295204435	+

Sequences

CDS

>AfisC2G02040
ATGGATATGATGCTTGTGAAGAGAGAGACAATGAATGAGAATGGGAAGAGAGTTGTAGGCACAACTGCACAAACTGTTATTGAGGCAAAGCCTGTGAAGCGGCGCAGAAGGGAACCTGCATTGCCCGTTGTTGTAGCTACTGGTAGCGGAGAAGCAACAACTGAGCAGGCAGTTGGTACTACTATTAAGAGGAGCTCTAGGTTTCGTGGGGTTAGCAGGCATCGATGGACCGGTCGATTCGAAGCTCATTTATGGGACAAAGGATCCTGGAATGCAACAAGAAGGAAGAAAGGAAAGCAAGTTTATCTTGGCGCATATGACGAGGAAGAATCAGCTGCAAGAGCTTATGATCTTGCTGCTCTCAAATATTGGGGACCAACCACCTTTACAAACTTTCCAGTGACTGATTATGAGAAGGAAATAGAAATAATGCAGAATATGACCAAAGAAGAGTACCTAGCCTCTTTGAGAAGAAAGAGCAGTGGCTTCTCAAGAGGAGTATCAAAGTATAGAGGAGTTGCAAGGCATCACCATAATGGGAGGTGGGAAGCAAGAATAGGTCGAGTTTTTGGGAACAAATATCTCTACCTTGGAACATATGGCACTCAGGAAGAAGCTGCCCATGCATACGACATAGCAGCAATAGAGTACAGAGGAATCAATGCAGTGACTAATTTCGACTTAAACACATACATAAGATGGTTAAGGCCTGGAACTGCTACCAATGTGTTAAACAACCTACAAGAACCAAACCCTAACACTAGCCAATTCCAAACTATGCTACAACCATCTAATCAGTTTCAGTCAAATGAACCACTACCAATTCCGAAAACATTCCATTTAGATGAGTTGCAAATACCTTGCAAACAAGAATTTGTACCCTTTCAAATTCATGGCAGCAAGTCATCTCCTACTGCACTCAGTCTTTTGCTCAGGTCCTCTGTCTTTCAACAATTAGTTGAGAAGAACTCAAATACTACAGAAGAAGAAACTGATGAGAGTACTGGGGGCATTTACGGAACTTTAGAGATTGAAGAGAATAATGGGTATTATGGTGGAAATGAGAATGGTATCTGGAATGGTGTTTTGGGTATTCAGTAG

Protein

Gene

>AfisC2G02040
CCCTACAACAAAACTACAAAATGCAAAAGAAACTATATATAATCATAGGAGAATTCCGATGTCATTCCTTGTGTTGTCTCCAGCATCAACAGCACCAATAAAGCATATTTCATATGCCATATAAATATATAGATTGAAGATATCGATAAAATGGATATGATGCTTGTGAAGAGAGAGACAATGAATGAGAATGGGAAGAGAGTTGTAGGCACAACTGCACAAACTGTTATTGAGGCAAAGCCTGTGAAGCGGCGCAGAAGGGAACCTGCATTGCCCGTTGTTGTAGCTACTGGTAGCGGAGAAGCAACAACTGAGCAGGCAGTTGGTACTACTATTAAGAGGAGCTCTAGGTTTCGTGGGGTTAGCAGGTAAAAATTTATATATACGTATACATGTGTGTGCGCGCGTACACGCACGCAGATTCAAACCTTACAGTTGGTAGTTATCGCTACTAATCCTGCGATCTAATGAAAAATTGCATTGGATCCACAATACATACTACAAATTATATATAGTGGTCTAGCTAGATAAGCTTATCCTACCTATAGAGACGCTTATCAAAGAATTTTCTTAGGTTTTGATTAATATTACTTTAAATATTGAATTCATGTAAGGCATCGATGGACCGGTCGATTCGAAGCTCATTTATGGGACAAAGGATCCTGGAATGCAACAAGAAGGAAGAAAGGAAAGCAAGGTATTCTCAACCCTTGCACTAAAATAAAGCACTAAAGCGTTTACTTATCAGAGTAATTTACTAGTTATTGACAAACTATCGCAGTTTATCTTGGCGCATATGACGAGGAAGAATCAGCTGCAAGAGCTTATGATCTTGCTGCTCTCAAATATTGGGGACCAACCACCTTTACAAACTTTCCAGTATGTCAATAAGTACATTCGATATGGCTTGATTATGTAAATATGCATGTCTTATGCAGTTTACTATGGTTAATTTAGGTGACTGATTATGAGAAGGAAATAGAAATAATGCAGAATATGACCAAAGAAGAGTACCTAGCCTCTTTGAGAAGGTACACAAAACCTTATTACTTCCAATCTTATTTAATGAAAAGAAATTCTATGAACAAGTATACATTTCATGGTCACAGAAAGAGCAGTGGCTTCTCAAGAGGAGTATCAAAGTATAGAGGAGTTGCAAGGTATCTATTAACCCCAAGAAAAAGTACTTGTTTAAGATAGGTTATACAGCAAAATTTATAACTGTAAAATTTGGTCTCAGGCATCACCATAATGGGAGGTGGGAAGCAAGAATAGGTCGAGTTTTTGGGAACAAATATCTCTACCTTGGAACATATGGTATGTTCCCTACAATCAAAACAAAGAATACTATATGACTCATGTATAATAATGTCATGAAACTTGCATCAGGCACTCAGGAAGAAGCTGCCCATGCATACGACATAGCAGCAATAGAGTACAGAGGAATCAATGCAGTGACTAATTTCGACTTAAACACATACATAAGATGGTTAAGGCCTGGAACTGCTACCAATGTGTTAAACAACCTACAAGAACCAAACCCTAACACTAGCCAATTCCAAACTATGCTACAACCATCTAATCAGTTTCAGTCAAATGAACCACTACCAATTCCGAAAACATTCCATTTAGATGAGTTGCAAATACCTTGCAAACAAGAATTTGTACCCTTTCAAATTCATGGCAGCAAGTCATCTCCTACTGCACTCAGTCTTTTGCTCAGGTCCTCTGTCTTTCAACAATTAGTTGAGAAGAACTCAAATACTACAGAAGAAGAAACTGATGAGAGTACTGGGGGCATTTACGGAACTTTAGAGATTGAAGAGAATAATGGGTATTATGGTGGAAATGAGAATGGTATCTGGAATGGTGTTTTGGGTATTCAGTAGGAAGTGTGAAATAAAATGAAGTCCATGAGTGATTTAGTGTGAAACATAACTATACATAGAGATGAAGTACATCAAGCCTAACTTCTCTCATGTTTGTATGTTTGTTGTACATGGATTTCTCTTTGGTCTCGAATAAAAATTGGGTCTAATTTCCCAGGAGTGTATCTTCATCAAGAATAAATATTAAATAAATATATTGGTATGAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242611.1	3.6e-132	LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor At1g79700
Swissprot	Q6X5Y6.1	1.1e-77	Protein WRINKLED 1
trEMBL	A0A8B7CZZ6	3.1e-117	AP2-like ethylene-responsive transcription factor At1g16060

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54320.1	69.57	5e-77	285	ASML1;ATWRI1;WRI;WRI1	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02040	AT3G54320.1	207	57	1	30	236	34	234	69.57	5e-77	285
AfisC2G02040	AT3G54320.3	207	57	1	30	236	34	234	69.57	5e-77	284
AfisC2G02040	AT1G51190.1	181	58	0	51	231	174	354	67.96	2e-72	269

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	66	125	47.8	1.2e-12
PF00847.17	AP2	Domain	168	219	48.7	6e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009873	P	ethylene-activated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019432	P	triglyceride biosynthetic process
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process
GO:1904278	P	positive regulation of wax biosynthetic process
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network