result

Gene information

Detail information of AfisC2G02115

Location

Gene	Chr	Start	End	Strand
AfisC2G02115	chr2	309348281	309350131	-

Sequences

CDS

Protein

Gene

>AfisC2G02115
ATGGCTGATGGTGCTGCAGTGGCTGATGATCAAGCTTTCCCAGATCGTCAAGTGACAATTTTGTCCGTTGATGACAGCTTAATTTGCCTGAAAATCTTGGAAGCAAAGCTGCTCCAGTGCAAATATCATGGTTTGTTAGTTTTATTTCGTTTTAATTTTTTTCAATATTTGATTTTTGATTACATTTTTATACTGGTTTTTAGGACTCTACTTAATTATCACTGATCAGATTAAGTTTATTATGTTACTGAGATTTACTGCTTTGATCATTGAATGGAAAGATGCAAAAATAAAAATTGATCATTGTATGCAGTATCAACTTTTACTTAACATTGTCGTGATTTGCCATGCATGATCATAATTTAGTTGTATATGTATGATTTTGCAGTGATATCAACCAATTCAGCTATGGAAGCATTGGACATCCTGAGAGCAAAAGAGTTCAAATTTGATATTATTATTACTGATGTTCATATGCCTGGTATGGATGGGTTTGGGCTACTGGAACAAGTGGGTCTGGAAATGGACCTTCCATGTATTTGTAAGTCTTTTGATGTGGTTTCCATCGGTTATTCATTGTTATACTTAGGACTTGATATCATATATTTTTTTTACAGTAAAATATGAATAACAGTCTTGTAATTAGCGGAACCACACATTCTCTTTTTACGCTTTTGTGTTTCAATTTTCATATTATGCTTGTTTGAACATATTTTACTCAGACTATATGTTGAAATATAACTCACTCAATTTTTATATGACGTTTTACCATGGAATTTTTATAATGACAAATGTAGTGCTCCAAATTATGGATGAAATTTTGATAATGGTACTGTAATTCAATGAAAAACTAGATGCTTCTTTTCTGAAATTTATATAAACTATGTTATGCCAAACACCATATGATGTTATTGAAGTTAAAGTTTGATATGTCTATTTGAAACTAATACATAAGAACTATGTTAATCAATAAACTTAGTATGGAGTATATGCATGCCTGTTTGAAAGAGCATGTGTATTGTTTTTGGTTCAAATCATACTTCCTCAAAATTTACAGGCAAAACTTGGTTCTGGGTATAAAAAAACATAAGATCTATGTTAATCGATAAATTTAATATGGAGGCATGAACAAAGTTGACAATTGGTAAGACATTTCATTGAAAGTACTTCTGCTTTTGTGGATGTGAAACATACAGTGGTGTCCGGGGATGATGATCCAAAAACTGTGCTTAAAGGGATAGAACATGGTGCGTGTGATTATCTTCTTAAACCGGTTAGGATCCAAGAGCTCAGAACTATATGGAAACATATTCGGAGAAAGGAGAAGGTGAACAAGGTATCCAAAAAACATTCTGGCAATGCAACATCTGATTCGAGTAACGAAAACGTGGAAAGAAGGAAAAGGAAGAGACAGGACGGAGCGGAAGAAGATGAAGGAGATAAAGAAGAGCCCAAGAAGAAAAAGAGAATGGTTTGGACCGAAGAACTTCATTCCAAATTCATGGAAGCTATTAAGACTCTCGGAGAATATAGTATGTTTTATTCAAGTCAATAGTATCATAATGTGTTTACTTTGAAATCTTTTAAACAAAACTCCTCTTTAAGCAGTTGAATTTCTGCTGTTTTTGTACATACCTGACTGGATCACCGTCAGGCGATCCATAGTTTTTAGAGCCGACGATTGTAATTCCATGAATTTTTCTTTCTGTTTTTTTTAATGCAGAAGTTTTGCCGACAAAGATCCTCGAAGTCATGAAAGTTGAAGGGCTAACAAGAGAACATGTGGCAAGCCATCTTCAGGCAAGTTTTAATACACTACTTAATAGCTTGCAACATTACTTGTGCTGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	TEY42275.1	2.4e-47	two-component response regulator ARR-B family
Swissprot	O49397.1	8.1e-48	Receiver-like protein 4
trEMBL	A0A830BI52	4.6e-48	Two-component response regulator arr12

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G25180.1	51.77	3e-59	224	ARR12;RR12	response regulator 12

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02115	AT2G25180.1	226	96	2	20	232	19	244	51.77	3e-59	224
AfisC2G02115	AT4G31920.1	219	96	3	20	232	19	232	51.14	3e-57	218
AfisC2G02115	AT4G16110.1	251	110	3	5	232	16	265	46.61	4e-57	218

Ortholog group

Species	Genes
Allium cepa	g519560.t1; g99831.t1
Allium fistulosum	AfisC2G02115
Allium sativum	Asa0G01969.1; Asa5G02216.1; Asa5G06070.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00072.21	Response_reg	Domain	20	129	75.3	3.6e-21
PF00249.28	Myb_DNA-binding	Domain	185	232	26.4	5e-06

Gene Ontology

Accession	Ontology	Name
GO:0000156	F	phosphorelay response regulator activity
GO:0000160	P	phosphorelay signal transduction system
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0010082	P	regulation of root meristem growth
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031537	P	regulation of anthocyanin metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048367	P	shoot system development
GO:0080022	P	primary root development
GO:0080036	P	regulation of cytokinin-activated signaling pathway
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14491	ARR-B; two-component response regulator ARR-B family	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network