result

Gene information

Detail information of AfisC2G02288

Location

Gene	Chr	Start	End	Strand
AfisC2G02288	chr2	339283823	339286852	-

Sequences

CDS

>AfisC2G02288
ATGGATTTTCAGTATAATGAGATTCTTGGCAAAGGAGCTTCAAAGACAGTTTATAGGGCCTTTGATGAGTATGAAGGAATAGAAGTGGCATGGAATCAAGTGAAGCTCTATGATTTTCTTCAAAGCCCAGATGATTTAGAGAGACTTTATTGTGAAATTCATCTTCTAAAAACATTAAAACATAAGAACATAATGAAGTTCTACGCCTCTTGGGTTGATATCTCAAAAAGGAACATAAATTTTGTCACAGAAATGTTCACTTCTGGCACTCTAAGGCAGTATAGAAAAATGCATAGAAGAGTTCATATTAGAGCAATTAAGCACTGGTGTAGGCAAATATTGATGGGACTTCTCTACTTGCATAGTCATGATCCTCCTATTATCCATAGAGATCTAAAATGTGAAAATATATTCATTAACGGTAATCAAGGCGAAGTAAAGATTGGTGATCTAGGCCTTGCTGCAATTTTAAGAAAATCGCATGCTGTACACTGTGTAGGCACACCCGAGTTCATGGCTCCTGAGGTTTACGAAGAAGAATACAATGAGTTAGTTGACATATATTCATTTGGTATGTGCGTGTTGGAGATGGTTACTTTTGAGTATCCATATAGTGAATGCAAGAACCCTGCACAAATTTACAAGAAAGTCATATCTGGAGTAAAACCAGATGCATTATACAGAGTTAGGGATCCAGAAGTCAGAAAATTCATAGAAAAATGCCTGGCAACTGCATCTCAAAGACTGTCAGCTAAAGAGCTATTAATGGATCCTTTTCTTCAAAGCCAGGATCTTGGATCGGGTTGTTGGGAAGCGGATGTTATCGACATAGGGCTCATTTTCATTCCACCTTCGTATAATAGTGAATCATCTAATGATACTGACGATGATAATGAAGACATCAAATCTACTGTCAAGTCTCATGGCATCGACCTCTTTGACAACAACGACGACGGCGATGACGACGAAACATATATTGGAGATGTAGATATTTCGATAAAAGGAAAAAAAGGTGAAGACGGAGGGATATTCATTCGACTTAAGATTGGTGATAAAGAAGGACATATGCGCAACGTATATTTTCCGTTTGATATTGAAGAAGACACTGCACTTGAAGTGGCAGCAGAAATGGTCGACGAGTTAGACATAACTGATCACGAAGTCACTAGAATAGCAGAAATGATCGATGGAGAAGTTTCTCTATTAGTTCCAAACTGGAAGAATCGCATGGGTGTAGAATACGTACACAGCAACACTGATTCATCTCCATCAACTGAATCCAACTTTGAGTTCCCTAAACTGCATGAGCAATTCGAAGATGTAAGAGCACAATTGGAAGAAGTCCAAGAAGATAGCATTATAGAACCAAATGCCATGAAAAAATCAGAAGAAAATGAGAAGAAGAGTCCACGAGACCCAAGGGAAATGAACATAATGTATCAGATGAGGGCAAAAGGTTCAAGAAAAGGCTCTTTGGCAAGTAGAAGTTGTAGGAATCCGAATCTGGCTTTGGATCTTGACGTTATAAAGAAATATGATGAGAAAAATGATAAAATACAGAACCCAACACCGATTCAGTCTTTCCATTTAAGCAGAAATTCTTCGTGTAAGCGACCTGATTCGGAGATTGAGCAGAGCTTGAGCAGCAATTCTGCAGCCCAGGATGAAGAAATGAATCAGGATGTGTTGGAGAAAATATTTCCGAAGAATAGCTGTTATGTTGGTGAGTATTTACCAGCTTCTCTTCCGAGAGCCAGGTCACTCTGCATTTAG

Protein

Gene

>AfisC2G02288
GGACTACCCACCTTCATTTTTTTTCTGCATTTTCAATGCTTTGTTTCTTCCTATTATTTTAATTTAGTTTATCATTCATATATAAATATAAATACACACATTTTGCCAAAATGTGCTCTTGATTCTTGAATGCTTATCACCATTACTCCTGCTCCTGCTTGTTTTTCAACGAGGGTCTTCTCTGGATTATCATCAACTAATCCATTGAAAAGTACCAAGTATCACCAGTTATAGTTCGATTCAAGATACAGAGTGATGAGTCTTCATTCAGATGATTCATATATCCCCGAATTTGTTGAATTTGATCCAACTGGCAGATATGGAAGGGTATGTTTTCTTGTTTTATGATGTCCTGTTTATTAAATTAGTGGTTCATCTTAATTCATAGAACATTATATGTGTTATAAACAGATTTTATTTTTACTATTTTTGTTGTTGTACACATATAATAAAGGATTAACTAGACCAAACTCAAAATAGTAGTCCCGTAATAAGTTTTGGGCAACTTTTTTCATTGTCTGAAAGAACTGACATATATAATTTTGATTCATGGATTTTCAGTATAATGAGATTCTTGGCAAAGGAGCTTCAAAGACAGTGTATGTTACCAATCATACAATATCATTAAAAGTCTGATATCTTTCCTTTATCAACCATATAAATTTATTTTATCATTGGGAATTTAGTTATAGGGCCTTTGATGAGTATGAAGGAATAGAAGTGGCATGGAATCAAGTGAAGCTCTATGATTTTCTTCAAAGCCCAGATGATTTAGAGAGACTTTATTGTGAAATTCATCTTCTAAAAACATTAAAACATAAGAACATAATGAAGTTCTACGCCTCTTGGGTTGATATCTCAAAAAGGAACATAAATTTTGTCACAGAAATGTTCACTTCTGGCACTCTAAGGCAGTAAGTAGTAAATATTTAGATCAAGTCAATTCACATGATTCCACATATAGCATGTATAATTAAAAATTAATCATGTAAATTTACTTGGGGTATCCAGGTATAGAAAAATGCATAGAAGAGTTCATATTAGAGCAATTAAGCACTGGTGTAGGCAAATATTGATGGGACTTCTCTACTTGCATAGTCATGATCCTCCTATTATCCATAGAGATCTAAAATGTGAAAATATATTCATTAACGGTAATCAAGGCGAAGTAAAGATTGGTGATCTAGGCCTTGCTGCAATTTTAAGAAAATCGCATGCTGTACACTGTGTAGGCACACCCGAGTTCATGGCTCCTGAGGTTTACGAAGAAGAATACAATGAGTTAGTTGACATATATTCATTTGGTATGTGCGTGTTGGAGATGGTTACTTTTGAGTATCCATATAGTGAATGCAAGAACCCTGCACAAATTTACAAGAAAGTCATATCTGTAAGTTCCTTGGCTTATTCAATTCTGATAGTGGTATAAATCTCCTTGAATATATAAGGAGCAATATAAATCTGTACCTGGTACCATTGGTATAATTCAAGGCTTTATGTAACAATTTATAATACACCTGTGAACAGTAATGAATCTGTTTCACATGTAAGATAAAATTATGTTATGAACAAACGTATAACTCCTAGAGTTTAAGAGCAAAAGCTAATGCTATGACTTAATGTTTTCAACTATGTTTTAGGGAGTAAAACCAGATGCATTATACAGAGTTAGGGATCCAGAAGTCAGAAAATTCATAGAAAAATGCCTGGCAACTGCATCTCAAAGACTGTCAGCTAAAGAGCTATTAATGGATCCTTTTCTTCAAAGCCAGGATCTTGGATCGGGTTGTTGGGAAGCGGATGTTATCGACATAGGGCTCATTTTCATTCCACCTTCGTATAATAGTGAATCATCTAATGATACTGACGATGATAATGAAGACATCAAATCTACTGTCAAGTCTCATGGCATCGACCTCTTTGACAACAACGACGACGGCGATGACGACGAAACATATATTGGAGATGTAGATATTTCGATAAAAGGAAAAAAAGGTGAAGACGGAGGGATATTCATTCGACTTAAGATTGGTGATAAAGAAGGTGGAAATATGTTTAATGTTTTTCACTTGTTCATATTTGTATTTCCTGGTATATAGCCTATAAACGTAAGTTTTTCATGATTGTGCAGGACATATGCGCAACGTATATTTTCCGTTTGATATTGAAGAAGACACTGCACTTGAAGTGGCAGCAGAAATGGTCGACGAGTTAGACATAACTGATCACGAAGTCACTAGAATAGCAGAAATGATCGATGGAGAAGTTTCTCTATTAGTTCCAAACTGGAAGAATCGCATGGGTGTAGAATACGTACACAGCAACACTGATTCATCTCCATCAACTGAATCCAACTTTGAGTTCCCTAAACTGCATGAGCAATTCGAAGATGTAAGAGCACAATTGGAAGAAGTCCAAGAAGATAGCATTATAGAACCAAATGCCATGAAAAAATCAGAAGAAAATGAGAAGAAGAGTCCACGAGACCCAAGGGAAATGAACATAATGTATCAGATGAGGGCAAAAGGTTCAAGAAAAGGCTCTTTGGCAAGTAGAAGTTGTAGGAATCCGAATCTGGCTTTGGATCTTGACGTTATAAAGAAATATGATGAGAAAAATGATAAAATACAGAACCCAACACCGATTCAGTCTTTCCATTTAAGCAGAAATTCTTCGTGTAAGCGACCTGATTCGGAGATTGAGCAGAGCTTGAGCAGCAATTCTGCAGCCCAGGATGAAGAAATGAATCAGGATGTGTTGGAGAAAATATTTCCGAAGAATAGCTGTTATGTTGGTGAGTATTTACCAGCTTCTCTTCCGAGAGCCAGGTCACTCTGCATTTAGTTCTTGTTAGTAGGAATAAATTTGAAGTATTGTATTATCTGGGTATGTATTTTGATTATGAATAACATTTGTGCTTACCATTTTGTAAATTATTTGATTTTCTGGTTGAGAACTTCTAAATAAGGTGAACTGTATATATTTTGTATGTATGCATCTTGGACCAGTTGGAAATGACCTTTGATCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241428.1	5.9e-209	probable serine/threonine-protein kinase WNK1 isoform X2
Swissprot	A2YMV6.2	2.0e-174	Protein kinase with no lysine 1
trEMBL	A0A8B8ZUM6	2.5e-177	probable serine/threonine-protein kinase WNK1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G04910.1	67.04	5e-173	604	ATWNK1;WNK1;ZIK4	with no lysine (K) kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02288	AT3G04910.1	443	107	4	4	407	25	467	67.04	5e-173	604
AfisC2G02288	AT3G04910.2	432	108	4	15	407	13	444	65.97	9e-166	580
AfisC2G02288	AT5G28080.2	417	114	5	4	406	26	440	68.82	2e-160	562

Ortholog group

Species	Genes
Allium cepa	g266442.t1
Allium fistulosum	AfisC2G02288
Allium sativum	Asa5G02075.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	4	260	169.6	7.5e-50

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0009911	P	positive regulation of flower development
GO:0046777	P	protein autophosphorylation
GO:0048573	P	photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08867	WNK, PRKWNK; WNK lysine deficient protein kinase	EC:2.7.11.1	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network