result

Gene information

Detail information of AfisC2G02420

Location

Gene	Chr	Start	End	Strand
AfisC2G02420	chr2	366639377	366640422	-

Sequences

CDS

Protein

Gene

>AfisC2G02420
ATGTGCGAGTGTAACACTTGCTACACCGGTCCCCATTGCTCCACCTTGCTCCCCAACTGCTCCTCCGATGTTATAAGTGGCGACGCTTTGTTTCTCGAAAAATATTGGATGCAACACAAATCAAACGCTGCCCTTCTCATATCATCCTGGCATAGAATGAGCTATTTCTTCCAGCCATCTTCCGGTAATATCATTAACACCGAGCTTGAAAAACACGTCAGACTTTTACATCAGGCCGTCGATAATGCCAAAGCCGATGATAAGTACATCGTCTTCGGTACCGGCGTCACTCAACTTCTCAACGGTCTAGTTATCGCCCTTTCCCCAAATGATATATCACCCGATGTGCAACCAGCTAAAGTTGTCGCTGCTGTCACGTACTATCCCGTGTTCAGAAAACAAACCAAATTCTTTCGTTTTACCGGTTACGAATGGAAAGGGAATGCATCCGATTACGTAAACACCGCTTCTCCTCAAAACATCATATAATTGGTGACTTCCCCTAATAATCCCGAAGGCCGATTTCACCAATCCATAATCAATGGCTCCTTAGCGATCCATGACCACGTCTACTATTGGCCACATTATACCCCAATTGCACAACCCGCCGACGAAGATATCATGTTGTTTTCCATGTCTAAATACACTGGACATTCCGGCAGCCGATTCGGGTACGCATGACGTATTTCTTAATTATTTTATTTTTTCTTAATAGCATCTAGCGGTAGTGATCATATATCCTAACAAAATAATTACTGTGTATCTATAGGTGGGCGCTCATAAAAGACGTGAAAGTGTATGACAAGGTAATGGAGTACATGACCGAGAACACAGAAGGAACTTCCCACGATACGCAACTTCGAACCTTGAAACTAATAAAGGAGATCTTGCTGCAAATGAAAACGAAATGGGAAACAATGGCCGACATCAACCAATTTGGCTATCAAACATTGTCTAAAAGATGGGCTGAACTTACCAAGCTAGTTGCATCTTCAGATCGATTCTCCCTTCAAAACCTCTCCCCGCAATATTGCAACTACTTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	AAK95662.1	3.1e-115	root-type alliinase, partial
Swissprot	P31756.1	2.2e-94	Cysteine sulphoxide lyase
trEMBL	Q94EJ9	2.2e-115	Root-type alliinase (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	39.81	2e-69	258		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02420	AT1G34060.1	319	147	6	2	284	71	380	39.81	2e-69	258
AfisC2G02420	AT1G34040.1	319	142	5	2	284	70	378	41.07	1e-68	256
AfisC2G02420	AT1G23320.1	321	168	7	1	284	2	314	33.64	2e-50	195

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	1	20	24.5	2.3e-05
PF04864.10	Alliinase_C	Domain	23	141	153.6	5.8e-45
PF04864.10	Alliinase_C	Domain	142	284	222.6	6.3e-66

Gene Ontology

Accession	Ontology	Name
GO:0016020	C	membrane
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009888	P	tissue development
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009851	P	auxin biosynthetic process
GO:0009908	P	flower development
GO:0016829	F	lyase activity
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0070529	F	L-tryptophan aminotransferase activity
GO:0070546	F	L-phenylalanine aminotransferase activity
GO:0070547	F	L-tyrosine aminotransferase activity
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network