result

Gene information

Detail information of AfisC2G02644

Location

Gene	Chr	Start	End	Strand
AfisC2G02644	chr2	406763073	406765020	+

Sequences

CDS

Protein

Gene

>AfisC2G02644
TTCTTCTTCTTATTATTATTATTTTAAATAAATAAAAAAACTAAATATGAAGCAGTAATCATCATCAGTATGTTTGTAAGAAGGATCTAGAAAGTATTTTTGTGATTTTGTCTGGCAAGAACATTGTTACCCTTGCCTACAACTTTTTATATTTAGTTGCTATCATTCATAAGATTTTGTAGATAGGGGAATCCTTTATGTTTCCTTGGAATGTAATGTATTTCACCTTTTACCAAATTAATTTTCTCTCTTTTTATTCATCTGTGCAAATATGTAATGTGTCCCAATCAAGTTGTAGGAAAATCATGTGACATCTAATACAAAATTTACATGCTTACTTATCCTTATCCTCGTAACATTCACACACCGGTTAATTTCTCATTCATATAAATATAGGGGATTGATTCAGTAGTTAGTACTTTAGTAGAATCGGCTTTCTTGCTTTTTGTTAACACACTCTCTCTTTCTTTCTCTATGATGTCAATGAATAACAATCAAAGTCAATACCAGTTTCCCTTCTCAATTCAAGCTGATACTCCACAGCTTTCGAGTTCAATTCTACTCCATCCTCATCAAGATTATCTGCCTATGCAAATGCAACAACAAGATGTAAATTTTGATCTTTCATATCCTTATTCTGTATTATTATATTACTGTGTGAATTGTCACAAATGTTTACAACCTATTCATTTCTTTATTGCAGCCCTTCAGCCACTACACAACAGATCAAACTAATGGAAATGATTCAGTAAAATGGATGTCATCCAAAATGAAACTGGTCAAAAAAATGCTAGGATCAGACAACGAAATAAATGAAAAAAAACAAAGAAAAACTCGAGAGTCGTACAACCAACTGCAGCTAAATCAAGCAAGTAGCAGCAGCAGTAACAACCCAGCAAAGGAGATAATCAGAGTCTGCTCCAGTTGCAGTACAACTAAAACTCCGTTGTGGAGAAGTGGGCCCCAAGGACCAAAGGTAACTAAACAAAATATGTTATCAATTATGTAAGAAACACAAATAAAGATATATATGACAGGGTACATCTTAGTTGCTAGATCTTTGTTAGATTTAAATACATGAAGCACACTCTGATCTAATGGTTAATTAGTTCAGTGTCTATAATGTTTTTATACGTGTCACAACAGCCTTGTCCATAAATTTACTTTATAAATGAAACAAGCTTCATAAATGATATACATATATGTATGACATAGCACATCTTAGCTATTTGATCTTTGTTAGGTCTCAAACACAACGTGATTTAATGGTCGAGATCTATTGTGTTACTTGTTGTTTTTTTATGTGTCCTAGTGGACGTCCTAAAATATACTGCATAAATGAAACCAGCTTCATACATAAATGAAACAAGCTTCATAAATGACTAGTATGTTTGTATAATTTTGTTGTTGCAGACTCTTTGCAATGCATGTGGAATAAGGCAAATGAAGGCGAGGCGTGCAATGAGACTAGCAGCGGAAAGATCTAACATGGATCGAACTATTCCATTTAAGAAGAGGTTTAAGATATCATCGCCTCCTAAGCAGAAGCTGCAATTTGATGAAATCAGTTTAAGTTCAAACAACAAGTTAGAATTCCAGCAATCATTCCCACAAGAAGAGAAGGATGCTGCAATATTGCTAATGGCACTATCATGTGGTCTTATACATGGTTAATGTCATTCCCTTTACATTATTTCATAGGTATATATATTAATAAGTTTTGAGTTGTTGAAATTTATGGTGTGTAGTAGAATAAATATGAAGTTTGTTGAGAGGATATTGTTCTTCAGTAAAGAATTTGAGCAGCTGAGTGTTTTTTTTTCCTTGCGTAATTATATGTGTTGCTATATAGTTCACTAGTGAAAATCAGTAAAATGATTTAAATATATTCATTCTCTCTTTTACTTTATGGTATCATGTATTATCCTTATGTACGCAGTTTTCATTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009388677.1	2.0e-16	PREDICTED: putative GATA transcription factor 22
Swissprot	Q9SZI6.1	1.1e-06	Protein GNC-LIKE
trEMBL	A0A804I3V4	1.4e-16	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G26150.1	36.79	2e-25	112	CGA1;GATA22;GNL	cytokinin-responsive gata factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02644	AT4G26150.1	212	85	4	57	222	144	352	36.79	2e-25	112
AfisC2G02644	AT5G56860.1	123	44	3	59	148	141	263	37.40	3e-16	81.6
AfisC2G02644	AT5G56860.1	39	19	0	184	222	360	398	51.28	7e-07	50.8

Ortholog group

Species	Genes
Allium cepa	g113541.t1
Allium fistulosum	AfisC2G02644
Allium sativum	Asa8G04594.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	117	150	57.3	7.4e-16

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009416	P	response to light stimulus
GO:0009725	P	response to hormone
GO:0009845	P	seed germination
GO:0030154	P	cell differentiation
GO:0048581	P	negative regulation of post-embryonic development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network