result

Gene information

Detail information of AfisC2G02650

Location

Gene	Chr	Start	End	Strand
AfisC2G02650	chr2	407498954	407503172	+

Sequences

CDS

Protein

Gene

>AfisC2G02650
ATGGCTACTGTGGTCAATACTAAAAACAACAAAAGCTCCTCTTCATCCCTTACTAATGTGGTTCCCGATCTTAGGACCGAGGCCAGATTCATCAACGCTCGCCGCCGTCGACGTTCTGGTCAGAGACTCCGACGCCAGCACTTGACAAGTGGCTTGCAGCACCTACAGCTGCCACGAGTAAGCTGATCAAGTTCTTAACTTTTCAACTAAGTTATGCTAGTCGGTTAATTTCTTTACTTGGGTATGTTTCAAATTTTGTTCTTGTTTAGTAGATGGCAAGTTTGATCTATGATCCGTTGTTTGTTAGAGCGTCTGATTGTTATGGTTTCAGTTTATCGTATGAACAGTGGTTATAAAATGTTACTTGGTCTAAATTCTCTTATAAACACTAGTAATTATGTTGAATGTTATTAATTATTGCTTGTTGTATTGCTATATGTGTACACTGTCAAGTGTTACTGACTATTGCCTATTATGGCTGATCTTGGTTTGGGTGAACTTATTGGGACTGGGGTCCATGATCTGCATGAGAAATATCACTAAAAATAATCAGATCTGGTGTGAATGAGATATATAAAGATATAATCAATAGATTTACTATATTTTGATCTCAATGTAGACTTCAATACGAGTCTAATTATAGATTTCAATACACGTATTTGGAGATATGATAGCAATACGCTCCCTTTAAGGGAGATTATACGTTTCAAGTATTTTAATAATTTTCATAATATGTTATACGTTTTTATATTATTAGTATTATTAGTATGTATTGCTAGTAGTATGTCTGTAATTTCCTTATAAGATAGTATAGTACAGTATAGTAAGGATTAACAGAACTGATGCTTTCAAAATCCTTGTTTGGAAACGAATTTTGAACGTATTCATGAGACTTAGGATGAAGATCAAAATCTCCTATATTGGATAGTATTAATTTTCTTGTTTGACAACGCTTAACGACAAATCAAGCTCAAACACGATGAATGGATTGGACAATGCTAGTAGTTTGTCGCTATGGTACACGTGCACTACACGATTGGTTATCGATGCACAAGATAGAGCAATAAATCCCAATATATTGTAAATTTGTTTATTATGGTAAAAGCATTTAATTATCAATAAAGTTGATAACCTCAACAAACTACGAAATCAATCAATCTAACAAATACAGATAAGATTTTCACATAACCATCCTCTTCATTGATATCAAACAATTAAAACAAGATACAGGCGACAAATGTGGAACGATACTCTCATGTCTTTGCATTTAATATATTTTGATTATCAAAAGATAAGTCTAGTTAAATGCAAAAACTCTCCTCCAATGAGAAGGATAGTGTTGCAAAACTTTACTTAAGGAAGAATGGTGCTAAACATTTTACCGTTATTTTAATAATTTTTATATAGCATTTATATGTATCGCTAGTAGTAGTAGTAGGTCTATCGCTAGTAGTCCTTATATGATAGTACAATAAGGGTCGCTAGAACTGATTACTTTATAAATCTTTGTTTGGAAATGAATTTTGAACATTTTCTCAAGCCTTAAAACGAAGATCCGAATTTCCAATTGGATGATATTAAGTTTCATGTTAAACAACGCTTAACGACAAATCGAGCTCAAAGATGAATGGAATCACCAATGTTAGTGTCGGTATGGACACGTGCATTACACAGTTGGGAACCAATACATACATAGAGCAATAAATCCCAAAAGAAGGAAGATTTGTTTATTATGCTAAAGTATTTGAGTATCAACAATATCGACTAGTAATTCAATCTACCAAACAAATGCAAATATGTTTACACATAATCATACTCTTTAATGATATCAAACAGTTATAACAAGGTGCAAAGGTAGACATGGAACAACAATCATGATAAAAGTTTGGAAAAAATAAAACAATGTTTTCATTGAGAGAGAAGAAGATTGATTTTATTTTGTTTTGTTTTTTATTTATTTGTCACAATATAACCACCCATAGAATATTACCCCTTGACTTCATATTTATATCAAATAGTTCTAAAATGGTTCAAACATGAATAAGGAATTTATCTTGGTGGACCACCCTATAATATAAACCTGTTTCTATCTTGCTTCTACCTATTTTCTTGAATTAATCCAAACCTCTTTCTACACAATAAGAGGGTCACCAATTTTAACTATTTTCAGCATTGCTAATGAGGATATATGAATCTGGAGGTTCTCGTATCTAGTCTCCTAGATATCAATTATTAATTTCTTCTTTCAGTAAAAGAAGTAAATTAAGAAGGGAAAAAAATCAGCATCGGTAAAATAGTAGTTTGGTCTATTTTGAGTCTTCTGTTTGATATCCTTGCTAAGTATGAATCTTACAGAGCATATTGCTTCGTTTTTTGACACTGTTAGTTGTTTGATTTGAGTGGCCATCACGAATAAGGTTCAAATAGATAAAATCAACATTTGCACACTGATTATTTTTTGGTGAAGTTTGGTTTCAGTGGGCAGCACATATTAGAACAGACAAGTGCATTAAAGATGACCTGTATTCCAAATTCTACCAAATTTACTTATCTCCCTAAATTTCAATATTTACTTGATTTTGGAGTTTCTTATAACATACTAGTGAATTAATATAGGAGACAGATATGTAGACCAAAAAATGTAGTTTTGCTTTCCTGTCTTCTGTTATCAATCTCTAATACATAATTCTTTTCCAAAAAATAGTATCCAAACATGATTTCTTTCATAACAGGTAACGTCTCTTGGTCTGGTTTCCCAAGCACTTGACACTGATGTATGGTTACAACTTGGCCACTACTGTAGTTTCTTATTTCTTGCATATTATACTATCATTAAAATCAAATTCATTATGTTTTTTGTGCAGCGCATTGGAGAGAATGTGAGGTTTCTTTTGGCGAAAGAGCTTAAGAACAGCGATGTTAGTTCTCTTGGCAGGGTTGTGCTTCCGAAGGTCAATCCGTCTACATTAACTACTTGTAAATTAAAAGACACATTATATATGCAATAAATATGTAAGTAATAACTTACATATACACTCATTTTATTGTAACATTTAATTGTTATAATGGTATACAGAAACAGGCAGAGGCTCATCTTCCAGTGCTGACAGCAAGAGATGGTGTCGTGCTTACAATGTCCGATATGGAGTTCCCTCGAGTTTGGACCTTCAAGTATAGGTCTGTCATGCTTGTTTAATATGTAAGAGCAATATTATTAGATTAAATATCCTTAAACTGACTCTCTTGTTCTACATTACTTGTTTACAATAGGTACTGGCCCAACAATAAAAGCAGAATGTACATACTAGAAAACACAGGTAAGCCTGAGAATATTTGTACTTTTTAAGTAACTAATAGTAAAGCTGTAGTTGGCAAACTCTCTATAAATAGTCTACGCTACTTATAAGTAGTTTCTTGAGTTTGAATGTTTGGAAAATCATTATAAGGAGGTAACATAAGAAGGTTAGAAAATAAAATCGGAGAAGAAATATTTGTTGCTTGTAAGTAGCCTCATTATTTTCAAAAAGGATAAAAGAAATATCACTATCTAACGTTCACCATCTATTTACATGAATATGTCCAAATTTTTAATTTGGTAGACATTTTTTTACTAATAAGTCATCACAGTCAAATATCAAATCATTTAATTATTTTAGTTTAAAAGTCAAATTATATCCAAACACCTTTAAGAAGATTAGAATAAGTAGTTGCCAAACTCCCTCGGGATCTCAATTTGTATTACTTCTTGTTATATATTGATTTTAATTCAGGGGACTTTGTCAAGGCTCACAACCTCAAATTTGGTGATTGCATCATGCTCTACAAGGACGATCAACATGATAGATATGTATGACTTTTAATAATTTTTCCTTGAATAATTACATTCAAAAAAGTAATAACATGTTTCTGAACTTAAATAAATCTGCTCACTATGTTTTAGATAATTCGTGCAAAATCTAAAGCGAAAACGCAAGAGGAAGCAATCGCAGTTACTCCCGTTGATGAAGGAATTTTCGATGCTATTGTGCCAGATATTGCTGTGGCAAGGGCAAGATATTCTGACCTGTATCTTCCATGGAGTGATTCAATGAACGCTGCGTTTGGTCTTAACTATGCATTCACAGAAGACTTTCCTCTGACTTTTCCTGATGAAATGTTTGCTAGTTCATCGACCACAGACGGTTCCAATCAGAGTCTGTCTCTTTATGATTTCAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020243040.1	6.0e-84	B3 domain-containing protein LFL1-like
Swissprot	A4LBC0.1	3.7e-38	LEC2 and FUSCA3-like protein 1
trEMBL	A0A426ZYL3	1.3e-59	TF-B3 domain-containing protein (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G26790.1	44.25	2e-37	152	FUS3	AP2/B3-like transcriptional factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02650	AT3G26790.1	174	90	3	31	202	42	210	44.25	2e-37	152
AfisC2G02650	AT3G24650.1	105	41	0	77	181	566	670	60.95	8e-35	144
AfisC2G02650	AT1G28300.1	151	78	2	79	220	167	317	42.38	1e-28	123

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	85	179	53.4	1.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0009657	P	plastid organization
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0010030	P	positive regulation of seed germination
GO:0010262	P	somatic embryogenesis
GO:0010344	P	seed oilbody biogenesis
GO:0010601	P	positive regulation of auxin biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0031930	P	mitochondria-nucleus signaling pathway
GO:0043167	F	ion binding
GO:0043565	F	sequence-specific DNA binding
GO:0048573	P	photoperiodism, flowering
GO:2000034	P	regulation of seed maturation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network