Detail information of AfisC2G03025


Location
GeneChrStartEndStrand
AfisC2G03025chr2466582361466604949+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008789526.12.9e-276helicase-like transcription factor CHR28 isoform X2
SwissprotQ94BR5.14.1e-227Protein SNF2-RING-HELICASE-LIKE 2
trEMBLA0A8B7C1D32.1e-276helicase-like transcription factor CHR28 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G50410.153.690.0 858SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily200572224.41.5e-66
PF13920.3zf-C3HC4_3Domain60965228.59.2e-07
PF00271.28Helicase_CFamily73382852.35.4e-14

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0000724Pdouble-strand break repair via homologous recombination
GO:0003677FDNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0004386Fhelicase activity
GO:0005524FATP binding
GO:0016567Pprotein ubiquitination
GO:0005737Ccytoplasm
GO:0006355Pregulation of transcription, DNA-templated
GO:0008270Fzinc ion binding
GO:0042981Pregulation of apoptotic process
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0043933Pmacromolecular complex subunit organization
GO:0044427Cchromosomal part
GO:0048025Pnegative regulation of mRNA splicing, via spliceosome
GO:0080188PRNA-directed DNA methylation

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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