Detail information of AfisC2G03067


Location
GeneChrStartEndStrand
AfisC2G03067chr2474747320474767367+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_009417723.10.0e+00PREDICTED: E3 ubiquitin-protein ligase KEG
SwissprotQ9FY48.20.0e+00RING-type E3 ubiquitin transferase KEG
trEMBLA0A804KJY10.0e+00RING-type E3 ubiquitin transferase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G13530.164.680.02170KEGprotein kinases;ubiquitin-protein ligases

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag358762.t1
Allium fistulosumAfisC2G03067
Allium sativumAsa5G02556.1
Arabidopsis thalianaAT5G13530.1; AT5G13530.2
Oryza sativaLOC_Os05g32570.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF14634.3zf-RING_5Domain65229.06.8e-07
PF07714.14Pkinase_TyrDomain14043384.75.5e-24
PF12796.4Ank_2Repeat50558140.52.7e-10
PF13637.3Ank_4Domain58563134.22.4e-08
PF12796.4Ank_2Repeat70478938.98.7e-10

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0016020Cmembrane
GO:0006915Papoptotic process
GO:0004672Fprotein kinase activity
GO:0007165Psignal transduction
GO:0005261Fcation channel activity
GO:0006796Pphosphate-containing compound metabolic process
GO:0006816Pcalcium ion transport
GO:0009628Presponse to abiotic stimulus
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0016043Pcellular component organization
GO:0019233Psensory perception of pain
GO:0022402Pcell cycle process
GO:0022836Fgated channel activity
GO:0033554Pcellular response to stress
GO:0070887Pcellular response to chemical stimulus
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0044267Pcellular protein metabolic process
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044702Psingle organism reproductive process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048731Psystem development
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0065008Pregulation of biological quality
GO:0080090Pregulation of primary metabolic process
GO:0098655Pcation transmembrane transport
GO:1901700Presponse to oxygen-containing compound
GO:2000112Pregulation of cellular macromolecule biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K16279KEG; E3 ubiquitin-protein ligase KEGEC:2.7.11.1 2.3.2.27 --
K06867K06867; uncharacterized proteinEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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