result

Gene information

Detail information of AfisC2G03153

Location

Gene	Chr	Start	End	Strand
AfisC2G03153	chr2	489034361	489035992	-

Sequences

CDS

Protein

Gene

>AfisC2G03153
GTATAACGGTGTACACAAATAAATCACAAACTCCCACTGTGTAACGACCAAGAGTTGCAAATGCTATGAGATAAAAAGCAAGTAGCCTATCTATCTATCCACAAATTGCAAGCAAAACGCAAGTTGCAAGGCAAAACACATGAACAAAAAATCCCTTATTTAATGCAATAAAAAAGATATTCCTGGTTGGTTAAGACAATGACCATAAAAGTGGGATAAGAATAAACATGAAATCAAATGAACCGGGTCCTTTTCTTCAACAATTGAACATTGCCGTCACGTCACTAAACCGTTTCCTTCTGATCACACTCTAATTCCCTCCTCTTCCGTTACCTAACTGCCCATATATAACCTCCCATCCAACTTCCTTTTTCTGCTATATTTTCAACTAAAAATAAAAATACAGCTCAACAAACAATGAAAGAAGATACTGACCAGTTCATCAGAGGCAGCAACATTGGAAGAGGCTCCTTTGGCACCGTCAGCCTCGCCTTCCATAAATCAGATGGTCAACGATTCGCTATCAAATCTGCATCCGCAACCCAAAACCCATTATCCACTTCCTCTTTAGATAACGAGATCGAAATCCTTCAAACGCTCAAATCGGAATACATAGTTTCATACCTCGGCAACTCCAGGACGAACCAACACCGCAACCTGCACATGGAGTACATGCCCAACGGCACGATCGCCGACGTGGCAGGCAAGATCGACGATAGCCGGATCCGAGGCTACACCCGTTGCATAACGAAAGCTCTGGCGTACCTTCATTGTACGGCGGGCGTAGTTCATTGCGATGTGAAGGGTCGAAATGTGCTGCTGGGCAGCAAATTGGGATCCGCTAAATTATCGGATTTCGGGTGCGCGAGAAGAATGTCAGGGGAGAGTGGATCCATGATCGGAGGAACTCCGCTGTGGATGGCACCAGAGGTGGTGAGAGGGGAAACGGCGAGTGCGGAATCGGATGTGTGGTCGCTTGGATGTACAGTGATCGAAATGGTGAAAGGGGGCAATCCATGGGGGGAGGGTTTGGGGAAGGAGATGCTGTTCCGGATCGGGTACGGAGATGAATTGCCGGAGTTGCCGTCGGGGTTGAGTGAGGCGGGGAGGAGCTTTGTTGAAAAGTGTTTGAGGAGGGAGAGGGAGGAGAGATGGACGGCGGAGGAGTTGTTGCAGCACCCGTTCCTGAAGGATGAGGGTGATAGGGTGGGTGAAATTGGTTGTTCGCCGAGAAGTGTTTTTGATTGGGTGGATTTGAAATTCGACGAGGAAGAAGGAGGAGGAGAAGGGAGTTGTGACGTGGTGATGGAATTGGGAATGGAGAGATTAATTGGATTAGTTAATGGTTGTGGTGACGTGGACTGGGAGAACAGTGAAGGATGGGAGTTAGTGAGATGATCTTATTTTTATCAAGGGGAGAATAAACGGCGGATTGATAAGATTGAGATGAATCAAGCGGTTTGAAATCGCTTCATTGCATATTCCATGTTTTTTGTTTGGATATGTTTTTGTACAATTTTGTAAATATCTTAACTAATTTATATTCCTATCCCTGTCCCAATTTTGCAAAAGTATGGAAGTATTTTTCCTTCTAACACAAAATAAACCATTGTGTTAATTTTGTGAATGTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_029124164.1	3.7e-88	mitogen-activated protein kinase kinase kinase 18
Swissprot	Q9ZVP5.1	3.5e-59	Mitogen-activated protein kinase kinase kinase 18
trEMBL	A0A8K0NE04	4.9e-90	Mitogen-activated protein kinase kinase kinase 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G07150.1	45.21	3e-66	248	MAPKKK13	mitogen-activated protein kinase kinase kinase 13

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03153	AT1G07150.1	334	157	13	8	326	23	345	45.21	3e-66	248
AfisC2G03153	AT1G07150.2	330	161	13	8	326	9	331	45.76	3e-66	248
AfisC2G03153	AT2G30040.1	326	160	10	8	326	17	336	46.93	6e-65	244

Ortholog group

Species	Genes
Allium cepa	g438931.t1; g77398.t1
Allium fistulosum	AfisC2G03153
Allium sativum	Asa0G01674.1; Asa5G02958.1
Arabidopsis thaliana	AT1G07150.1; AT1G07150.2; AT2G30040.1; AT2G32510.1; AT5G55090.1
Oryza sativa	LOC_Os03g18170.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	11	257	199.9	4.4e-59

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000915	P	actomyosin contractile ring assembly
GO:0000919	P	cell plate assembly
GO:0001558	P	regulation of cell growth
GO:0001568	P	blood vessel development
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0009524	C	phragmoplast
GO:0009793	P	embryo development ending in seed dormancy
GO:0010098	P	suspensor development
GO:0010103	P	stomatal complex morphogenesis
GO:0010229	P	inflorescence development
GO:0043123	P	positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043622	P	cortical microtubule organization
GO:0044446	C	intracellular organelle part
GO:0046777	P	protein autophosphorylation
GO:0050793	P	regulation of developmental process
GO:1900745	P	positive regulation of p38MAPK cascade

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network