result

Gene information

Detail information of AfisC2G03173

Location

Gene	Chr	Start	End	Strand
AfisC2G03173	chr2	493795359	493798087	+

Sequences

CDS

>AfisC2G03173
ATGGCTTCTTCTATAGCAAGTTCAGAAATTCCAATTATTCCAAAGCAAGACACCTTTTCATTTTCATTTTCCGAACTTCTAAATGGAGCAAAAGAGGAAGAAAATAACAGTGATAGAAATAAGGACAGCAATAGCAATTACAACAATAATAACAGAGTTGGTGTGCCAAAGTTCAAATCACTAAACCCACCCTCCTTGCCAATTTCTCCTTCTTCCATATCTCCTTCTTCCTACTTTGCTATTCCAGCTGGACTCAGCCCTGCTGAGCTCCTTGATTCTCCTGTCATGCTCATGTCTTCTTATAATATTTTGCCATCTCCAACCACAGGAACAATTCCAGCTCAATCATACTATGCAAATCAAAATTCAAACAATTATCAACAAATCAACAAAGAAGAACAAAGAGCCTACCCTGATTTTTCTTTTCAAACCGACCCTAGAACTCAAAGCTACAATCAATCTTCTCAACCATGGAGCTACCAAGACGCAACAACCAACTCGTATGAATTGACTTCTCAAACAAACAATAACATAAAAAATGAGCAAATGGGCATAATCAGAACCAACTCAACTGAACTCCAAGCAACCAACTCCCACCAAATACTAAAAGGGAACAATAAATCAGATGATGGTTATAATTGGAGAAAGTATGGTCAAAAACAGGTAAAAGGAAGCGAAAACCCAAGAAGTTACTATAAATGCACTTTCGCTAATTGCCCAACTAAGAAGAAAGTAGAGAGGTCTGTCGATGGGCCTATAACTGAAATTGTGTACAAAGGTGCTCACAATCATCCAAAGCCTATATCAACTAGGAAGAACTCGGGTGGGTCGTATTTGGCCCAGCCCGAGACATCAGAAACCTCGTTTGGTGCACAGAATGATTCGGTTGCCACGCCTGACAATTCATCTGTTTCATTTGGTGAGAACGACAGCAATTTGGGTGCAGATGAGTGTGATCAGGCTGTGCATGATGCTAAGAGATTAAAGAGCGAAGAGAACGAAGGGATATCGGTATCAGGAAGCAGGACAGTTCGAGAGCCAAGAGTAGTAGTTCAAACCACAAGCGACATCGACATTCTCGATGATGGGTACAGATGGAGGAAATATGGGCAGAAGGTAGTGAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGCACAACAGCGGGCTGCCCAGTACGAAAACACGTAGAGAGAGCCTCACATGATTTGAGAGCAGTGATAACAACATACGAAGGCAAACATAACCACGAGGTGCCTGCTCCACGTGGAAGTGCTGCCCTAAGCAGACAGCAGCTGGCTCCCTCTGCTCCCACTTCTGCTATGGCTATCAGGCCATATGCAGCTACCAATCGCAGTAGCGATATGAATCAAGCTCCATTCACCCTTGAAATGTTGCAAGAGCCTAATGTTTATGAATCTTATAACGAATATGAAAACGGTTTGAATTCCTACATTAATCAGCAACAGATGATGCAGAACATGCATCTGAAAGCAAAGGATGAACCTCAAGACAGGTTCATTGAGTCCCTGTTGTGCTGA

Protein

Gene

>AfisC2G03173
TCTCAATTCTCTTCTTTCCATTCATTTCAATGGCTTCTTCTATAGCAAGTTCAGAAATTCCAATTATTCCAAAGCAAGACACCTTTTCATTTTCATTTTCCGAACTTCTAAATGGAGCAAAAGAGGAAGAAAATAACAGTGATAGAAATAAGGACAGCAATAGCAATTACAACAATAATAACAGAGTTGGTGTGCCAAAGTTCAAATCACTAAACCCACCCTCCTTGCCAATTTCTCCTTCTTCCATATCTCCTTCTTCCTACTTTGCTATTCCAGCTGGACTCAGCCCTGCTGAGCTCCTTGATTCTCCTGTCATGCTCATGTCTTCTTATAATGTAAGCAGTTATGCTTTTAATGGTTGTTCTTTTGTTTTCTCTTTAAATTTGTTATAGGTATATATATGGTGATAGAATTTTAGGGTATGCAGATAAGATCAGTTATAAAAAGACAGTATCCTTTTGTCTGTCTGTTCATAGAAGTTTCATTGGTTGCTTTTTTTGTCTGTTCCTCCCTGTTCCTTTTGCTTTATTGAAATTACTAATGTATATTATTTGGTTTTCCAGATTTTGCCATCTCCAACCACAGGAACAATTCCAGCTCAATCATACTATGCAAATCAAAATTCAAACAATTATCAACAAATCAACAAAGAAGAACAAAGAGCCTACCCTGATTTTTCTTTTCAAACCGACCCTAGAACTCAAAGCTACAATCAATCTTCTGTAATTTCTTTGTCCTTTATTTACTTAAAAACGTATATACTTGACTTTAAACTGTTGTTTTTACAAAGTCAACAATTTAATAATAATTGTTTATTTATTTTCAGCAACCATGGAGCTACCAAGACGCAACAACCAACTCGTATGAATTGACTTCTCAAACAAACAATAACATAAAAAATGAGCAAATGGGCATAATCAGAACCAACTCAACTGAACTCCAAGCAACCAACTCCCACCAAATACTAAAAGGGAACAATAAATCAGATGATGGTTATAATTGGAGAAAGTATGGTCAAAAACAGGTAAAAGGAAGCGAAAACCCAAGAAGTTACTATAAATGCACTTTCGCTAATTGCCCAACTAAGAAGAAAGTAGAGAGGTCTGTCGATGGGCCTATAACTGAAATTGTGTACAAAGGTGCTCACAATCATCCAAAGCCTATATCAACTAGGAAGAACTCGGGTGGGTCGTATTTGGCCCAGCCCGAGACATCAGAAACCTCGTTTGGTGCACAGAATGATTCGGTTGCCACGCCTGACAATTCATCTGTTTCATTTGGTGAGAACGACAGCAATTTGGGTGCAGATGAGTGTGATCAGGCTGTGCATGATGCTAAGAGATTGTAAGTCACTTTTCCCTTATTAATTACTACTTATTTGTAATATACAATCCATCTGTTCAAAGCTGTAGGATGTTAACTGAAGTATTCAAAGATATGACGATTCTTCTAACTAACCTTACCATGTGTTGTATGGTCGGTGTGTTATTTCCCTAGAAGTTTTATGTACCAGATCCTACTAATTTTTTTTTTTTACTCTTTTAAGTCATTTTTGTATGCAAATTTAATTTGAACTACCTTCGAAATTATTGTTCTCAAAATAACGCTTTTTTCTTACATAAAAAAAGAAGAAGAGAAAAAAAGAAAAATAATCTGTTTTGGTAAATAGTTTTCAAACTGGTTTGATATGAAATATGTTTTAAAAAGTAGTCTAATTGAGTAAAAAAGGTCTGCTAAAAAACTTGTGGCCAAACATCAATAATATTTTTAGATAATAAGAAAGTGAAAATATGAATATGGTACTAAGTCTGATATCTGGATTTTGAAACAGAAAGAGCGAAGAGAACGAAGGGATATCGGTATCAGGAAGCAGGACAGTTCGAGAGCCAAGAGTAGTAGTTCAAACCACAAGCGACATCGACATTCTCGATGATGGGTACAGATGGAGGAAATATGGGCAGAAGGTAGTGAAAGGAAATCCAAATCCAAGGTTAGCAACATTACTTATATCCCAAACTATTCTAAGTCATAATTTCAAATCATCTATCTTACATAAATGCTCTCTAACTATGAATATCAGGAGCTACTACAAATGCACAACAGCGGGCTGCCCAGTACGAAAACACGTAGAGAGAGCCTCACATGATTTGAGAGCAGTGATAACAACATACGAAGGCAAACATAACCACGAGGTGCCTGCTCCACGTGGAAGTGCTGCCCTAAGCAGACAGCAGCTGGCTCCCTCTGCTCCCACTTCTGCTATGGCTATCAGGCCATATGCAGCTACCAATCGCAGTAGCGATATGAATCAAGCTCCATTCACCCTTGAAATGTTGCAAGAGCCTAATGTTTATGAATCTTATAACGAATATGAAAACGGTTTGAATTCCTACATTAATCAGCAACAGATGATGCAGAACATGCATCTGAAAGCAAAGGATGAACCTCAAGACAGGTTCATTGAGTCCCTGTTGTGCTGAACATGTACTGCGATATATTTGTGTAAATTTGTAGGTCTTGTAGAAAATTATAGTGTTAATTTTTAATTTTCTTTTTTAAACCTCTTCTGGAGGTTTTTTTTTAATATTATTATTTTGTTTTGGGTTAACAATAATCAGGCATTTGTGGTGTGTTGTATTCCTGAATCCCTCTGGGATTTTGTACAAGTATAGATAGAAATTTCCTTGGAATTACATATTGGCAATCTATAATGTATAACGTTAACTTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271607.1	6.8e-129	WRKY transcription factor WRKY24
Swissprot	Q6IEQ7.1	5.3e-102	WRKY transcription factor WRKY24
trEMBL	A0A7S8F9L2	8.9e-147	Abiotic stress-related transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38470.1	48.44	1e-88	323	ATWRKY33;WRKY33	WRKY DNA-binding protein 33

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03173	AT2G38470.1	448	184	10	55	471	40	471	48.44	1e-88	323
AfisC2G03173	AT5G07100.1	376	105	12	54	428	9	301	49.73	3e-82	302
AfisC2G03173	AT1G13960.1	453	183	15	12	420	51	468	42.16	2e-73	273

Ortholog group

Species	Genes
Allium cepa	g157092.t1
Allium fistulosum	AfisC2G03173
Allium sativum	Asa5G02840.1
Arabidopsis thaliana	AT5G07100.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	209	265	88.9	1.8e-25
PF03106.12	WRKY	Domain	361	418	90.0	8.2e-26

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001101	P	response to acid chemical
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006952	P	defense response
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009617	P	response to bacterium
GO:0009651	P	response to salt stress
GO:0009846	P	pollen germination
GO:0009941	C	chloroplast envelope
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010243	P	response to organonitrogen compound
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043167	F	ion binding
GO:0070370	P	cellular heat acclimation
GO:1901700	P	response to oxygen-containing compound
GO:1990837	F	sequence-specific double-stranded DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13424	WRKY33; WRKY transcription factor 33	EC:-	MAPK signaling pathway - plant	ko04016
K13424	WRKY33; WRKY transcription factor 33	EC:-	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network