result

Gene information

Detail information of AfisC2G03202

Location

Gene	Chr	Start	End	Strand
AfisC2G03202	chr2	499280610	499282749	+

Sequences

CDS

Protein

Gene

>AfisC2G03202
TAAAATGCCATCGTAAAGCGAAATAATAATATAAATCCCTCCTTTACCTTTCTTTTTCCTTGTCTCTCTCATTCTCACTTTGTTCAATTCTCTCTTCACAGCTCCGTGATGTCCTGATATTCTCCTCAAACTCTCTAAACTCTTTTTTTTCCCTTCAAAGTTCAAAAAAGAAACCCTAGAATAATAATTATAAAAATTAACAATGGTTTTTCCTTCTTCCCTTCCACTCTATCAAGATCCTCCCACTTGGAACCAGGTATTAATCAACTTCCAAAAATCTATTTAAAGTTAGTGAAATATACCATTTTCATGAATATACTAATTCCTTTTCGTTCTTTTTTTCTCTATTTTTTTTATTATTTTTCAACCAGGATCAAGTAGTACTCCAACAACAGCAGCAGCAGCAGCAACAACAGCAACAACTTCAAATTGTTGCAGTCCAACCATCTCGTTCAGATGGAGTTTTAGTGCGACCGAACTCCATGGCGGATCGAGCCCGATTGGCAAAGATCCCTCAGCCTGAGCAACCTTTGAAGTGCCCTAGATGTGAATCTACTAATACTAAGTTTTGCTACTTCAATAACTATTCTCTTTCACAGCCTAGACACTTTTGTAAAGCCTGCCGCCGCTACTGGACACGTGGTGGTGCCATGCGCAACGTTCCAGTTGGTGGTGGCTGCCGTCGGAACAACAAGCGTAACAAAAACTCAGCTGCTGGTAGCTCTTCCAAAAATTCAGGTTCGTTTTTTTCACATTTGCCTTATACTCTATATCTTTTCTCTATCACTACTTTCTTCCATTCTTATGGGTTTTCATATACGATTCTTCAAAAAAATTAGACAGAAATATCTTAGATTTAATTGAAATCTAGGGATTTAGTGGACATATTATTATTATTATTTTCCCCCATTTTTAAGTCTAGTGAAGTCAAGACAGTGAATGTGCAGTGCTTTCTCTTTCTTTTTTTTTTCTTTTTTTATAACTTGATAACTAACTGTTGAGATTTATGGACTTACATTCTATATTCTTGGTATCATGCTTTATGCCATTTTAATGATTCTTAAACATTTCTTGAACATACGATCAGACTTCATTTTTTTTTTTTTTGCCTTAATACATTGACTGGTTCCATACATGGACTTATACTCTTTCTTCTTGGTATGCTTTCTGCCACTTTGTATGGCATATTTTACATGATTCTTCCACATTTCTTGATCATAAGATGAACAATAAAGGAAAATTAAAGATATGGGTAGTGCAAACAACTCTCCATAGTCAGCACTTCTAAAGTTTTCCATTTTATTTGTATAGAGCAGTTGAGACAGTGAATGTTAAGTGCAAAATTCTTTTCCCAGTATACATAGTTTTTTGAATTGATTTTTATATATGTGATATCTTGAAACAAGCAGCTACCGCAGATCGTCAGGCTGGTGACTCATCTGCAACATCGGGAGGCAATAATGCAGCAAGCTTTCCATTCATGTCGAATTTACATCCAATGATAGATTACACTTCACATGTTCCAAACATAGGGTTAGGGTTTTCTGGCATCCCTTCTATGAACGTGGATACATACCAGCAAGGTAATAGTACAAGTATGGGAATGGAACAATGGAGGCTGAATCAGATACAGCAGTTTCCGTTTCTGGGAGGAATGGAGTCTCAGATGACGCAGATGGCACCGGTGTCAGAGATTAACTATCCTTTTGATGGAGCTTCTTCTGTGAAAATGGAAGATAATCAAAGGGGGATGAATTTGGCAAGGCAGTATAATATAAATTTGGGTGTCAGTAGTAATACTAATAATAATGGTACAAGGCAGGTTGAACATTATTGGAATGGTGGTGGTGCTGGTGATGAAGGTGCATCTGATAATGCAACTGGGGATGGTGGCAATGGCAGTGGGAACTGGATGACTAATCTTTCAAGGTTCAATACTTCTTCAGCCGAACATCTGTTGTAGATTGGTTTTAGAAGCTTATTTTTATTTTTTTCTGAAACGGGCTTCGTGGATTCAAATATGGGGGGAGCATAGAATTGTTGATTACTAGCTCTAGTCTGCTCTTTTTTTTTTCTTTTTCTTTTTCCCTTTACTTTTTCTCTCTTCCTTTTTCTTAAATTTTAAAACTAGTAGGGGCTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009402261.1	4.7e-59	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56.1	9.0e-31	Protein PHLOEM EARLY DOF 2
trEMBL	A0A804JAP4	3.4e-59	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G55370.1	38.34	4e-41	165	OBP3	OBF-binding protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03202	AT3G55370.1	326	167	13	1	299	1	319	38.34	4e-41	165
AfisC2G03202	AT3G55370.3	270	133	9	52	299	101	364	40.37	2e-40	162
AfisC2G03202	AT3G55370.2	275	130	12	1	253	1	264	40.73	1e-38	157

Ortholog group

Species	Genes
Allium cepa	g301566.t1
Allium fistulosum	AfisC2G03202
Allium sativum	Asa5G02661.1
Arabidopsis thaliana
Oryza sativa	LOC_Os03g60630.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	70	126	109.5	5.8e-32

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010227	P	floral organ abscission
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network