result

Gene information

Detail information of AfisC2G03301

Location

Gene	Chr	Start	End	Strand
AfisC2G03301	chr2	513254192	513255222	+

Sequences

CDS

Protein

Gene

>AfisC2G03301
GGTATACTTAACCAAACAAGAAAAAAAAGAGAATAAAAAAGAAAATGGAGTCAAGTTTGGAGACTATATCTACCCTAAATTCAACCTTCAACTACAACATATCATCCGCGTCAGCTTCTCCTTCTCCAACTTCTTCTCCTCCTCCAACTGCTCCTCAGCCAGCAGTTGTCATCAGCCCCTGCGCTGCCTGTAAAATTCTTCGTAGAAGATGCGTGGATAAATGCGTTCTAGCCCCTTATTTCCCTCCCACCGAACCTCTCAAGTTCACCACTGCTCATCGCGTCTTCGGCGCCAGCAACATTATCAAGTTTTTACAAGTAAGCCCCCTGCTTCTCATATAAATTTTCCTATTTTTTATTATACAACTATGCCACTAACGAATTATGACCTGCAGGAGCTTCCCGAAAACCAAAGAGCGGACGCGGTAAGCAGCATGGTGTACGAAGCAAATGCAAGAATCCGTGATCCGGTGTACGGAAGTGCAGGCGTTATCTGCCATCTGCAGAAGCAAGTGAACGATCTTCAGACGGAGTTGGCCAGAGCAAAAGCAGAGTTGGTCAATATGGAAAGTCAACATGCAAATTTGCTTGCGGCTATCTGCGTGCAAATGGCGAACAATCAACAGCAGCATTGTCAGCAGATGCAACTTACACCTCCGGTGAATAATGTTTGCGAAGTTGGGCCTAATTGGATGATGAATTGCGAAACGGATCAGAGTTTTTTCATAGATGATACTCTGTGGGAGGAGCCGCTGTGGATATGATGAGACTTCGGATTGAATTAATAGCAAGTGTAGTAAGTATATATGAATGATATTAATAAGTTGCTAATTTTTGTTTGAAGTTTGAAGAAAGCGGATCGACAAAGTCGGTACGCGTAGTTCTTTGTTTTCTTTATATGTAGTAGTACTGTCGAGATGTGTAAGAGTGAAAAATAATTGGAGTTGTATGCAGTTCACACGCTATCATGTGTTTTTTTGTTGGTCTTATCTGATCAATTCTGCAAGCCGATTTATAAAATGTTGAAGTATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274553.1	6.4e-65	LOB domain-containing protein 1
Swissprot	Q9SK08.2	1.3e-38	ASYMMETRIC LEAVES 2-like protein 7
trEMBL	A0A5P1E9A6	4.6e-65	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G07900.1	59.30	2e-52	202	LBD1	LOB domain-containing protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03301	AT1G07900.1	172	58	2	41	212	29	188	59.30	2e-52	202
AfisC2G03301	AT2G28500.1	182	70	3	41	212	51	231	55.49	2e-51	198
AfisC2G03301	AT2G30130.1	135	46	2	44	176	7	128	54.81	1e-37	152

Ortholog group

Species	Genes
Allium cepa	g428318.t1
Allium fistulosum	AfisC2G03301
Allium sativum	Asa5G02791.1
Arabidopsis thaliana	AT1G07900.1; AT2G28500.1
Oryza sativa	LOC_Os03g17810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	45	142	142.7	3.5e-42

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016020	C	membrane
GO:0005739	C	mitochondrion
GO:0005654	C	nucleoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009536	C	plastid
GO:0009799	P	specification of symmetry
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0048441	P	petal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network