result

Gene information

Detail information of AfisC2G03410

Location

Gene	Chr	Start	End	Strand
AfisC2G03410	chr2	536085163	536086733	+

Sequences

CDS

Protein

Gene

>AfisC2G03410
ATGGGTAGTAGGAAACCACGCCCCACTTTGCACACATTCCCACATGCTACATATTTTTTTTTAAATACTTTTCACCTCATCTTTAATTTCATTTCTTTATATCATTATCATTATCATTATCTCATCAATATAATTAATATCATTATCATTGTCGACCTTCTCCCTCTTTTAATTTCTTAATGTTAATGTCACTTTTTATCTGAGAATCATGTACCGTCTTCTATGTCTTGGCTTTAACCAAAATTTCAAGCAAAGTTAAGTCTATTTTGTGCTATGTGGTCCTAGTCAAATCTTTAAAAGTAAGTTCAGTTACCTCAACTTTTCTCAAAATCTTTACTGTCTGTTAAAAAACCCTGCTCTCTCTTATTGCATACAATACAATCTTCAAACAAAAGCGTCAGTCCTACAAATAAATCAAAGCAAAAAAGATAAAGAAAAGGAAAGATGTTAAATTGAGTTTGATTAATCTTTTTGTAGTTTTAATAACTGCATTTAAATTTCTATAACTGAATTACGTTCAGGAATCATAATGGATCAAATCAGAAGAATCATCCACAGTTCAGAGATTAGAGACAATGGATCGTCATCATTGCTCAGGGACTCACCTAATTCCTCAGCTTTTTCAAAGCCGATGCTGTCCTCTTCATCCTCCTTGATCCTATCTCCCAAACTCCAATTCGGATCTCCGGTACTAAACGGGTCCATAAATTTCGGTTCATCACCCAACCACAACGCAATTACATCAACGAGTACTAGTACAAGCACAGATGCAAAATACAGAGAGTGTCTACGTAACCATGCAGCCAGCATTGGTAGCCATGTCACAGATGGATGTGGAGAGTTCATGCCTGCAGGTCCTATGGATCCTTTGAAATGCGCAGCTTGCGGGTGCCATAGAAGCTTCCATTGGAAAGAACCCGAACCCGATGCCACCAAGAATCTGGCCCCGCTTTCACCAGCTCGGAGGTTCATTAAAGGCAAAAGTTTTACCGAATACAATGAATCTTCAAGTGGGGAAAGAATGGAGTTTTATAGTAGTACCAAAGCTTGTAAGCCAAATGCAAAGGAATGCAAAATGAAGAGATTCAGAACTAAATTCAGCGGCGAACAGAAGGAGAAAATGAAGTTGTACGCAGAGAGGGTTGGATGGAGAGTGCAAAAGAAAGATGAAGGTGAAATGGAAAGATTTTGCAGTGAGATTGGTATAAATAGACAAGTGTTTAAAGTATGGATGCACAATAACAAGCATTTGGTTAAGAATAATAACAGTTATAAAGAAGACGAGCATATTGAAGGAAGGGAAAGTAAGTTTGAAAGAGTAAAGCTGCGCCCACAGCAAAATCAAGAGATTAATGGTGATCGATGCTCAGTTGAACGTTAAAGAATGGTATGTACGATTTGGTTTAGTTTGGTAACATTATAAACAGTCCATCTTTTTAAATCGTTCTCATGCCAGCTGCTTTACTTATTTGTAGCTTAGGCTTAGAGTTGATATTAATACATCGTGCTAGTTACTCACGCATGCATAAATTCGATGTGGATAAGCAAATTTTAATTTCTAACATCCCATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008444722.1	1.3e-36	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	A2WSZ6.1	1.4e-35	Zinc-finger homeodomain protein 5
trEMBL	A0A5A7VID6	9.2e-37	Zinc-finger homeodomain protein 2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G14440.1	44.72	1e-37	153	AtHB31;FTM2;HB31;ZHD4	homeobox protein 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03410	AT1G14440.2	199	81	7	82	251	89	287	44.72	1e-37	153
AfisC2G03410	AT1G14440.1	199	81	7	82	251	89	287	44.72	1e-37	153
AfisC2G03410	AT4G24660.1	172	74	4	82	239	48	213	45.35	1e-36	150

Ortholog group

Species	Genes
Allium cepa	g42183.t1
Allium fistulosum	AfisC2G03410
Allium sativum	Asa6G01464.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04770.9	ZF-HD_dimer	Family	81	130	85.7	1.7e-24

Gene Ontology

Accession	Ontology	Name
GO:0001101	P	response to acid chemical
GO:0003677	F	DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009725	P	response to hormone
GO:0009793	P	embryo development ending in seed dormancy
GO:0033993	P	response to lipid
GO:0042803	F	protein homodimerization activity
GO:0048574	P	long-day photoperiodism, flowering
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network