result

Gene information

Detail information of AfisC2G03489

Location

Gene	Chr	Start	End	Strand
AfisC2G03489	chr2	550138245	550144889	-

Sequences

CDS

>AfisC2G03489
ATGGCGTCAAACACCCCGCCGCAAAACCCTAACCTCCTCCGCTCCCTCAACGCCGCAGCTAACTCCTCCTTCTCCACTCCTCCCCTTAGTCAAATCTCTCAGCTCCACCGCCAAAACCCTAATCCTAACCCCTACCAACATTCCCCCAACCCTAACTCGTCTTCAAACCCTAACCCTAAATCTCGCCCGCCTCAAAAACCCAATAACCCCCCATCTTTCAAATCCGCCGAGCTGACCCCTGCCGCCCGTCGCACCAACAAGAAGCGAAAGCTCCCCGACAAGCAAATTCCCGATCGTGTTGCTGCACTCTTGCCTGAATCCGCCCTCTACACTCAACTTCTTGAATTCGAGTCAAGGGTGGATGCCGCATTGGCCAGAAAGAAGGTTGACATTCAGGAATCGTTGAAAAATCCACCATCTTTGCAGAAGACTTTAAGAATTTATGTTTTCAACACATTTAATCCGGCAAAGGTCAGTGAACCTGCATCATGGAGTTTAAAGATCATTGGGAGAATTTTGGAGGATGGAACTGAAGAGAGTGCAGGGAGAGTAAATCCAAATTATCCCAAGTTTTCTTCATTTTTTAGGAGGGTTAGGATTGATTTGGACCCGATTTTGTACCCAGAGAACCCAACAATTATTTGGGATAATGCTAGATCGCCTTCGCCGTTGGAAGGGTTTGAAGTTAAGAGGAAAGGAGACAAAGAATTTAATGTTACGATCACATTGGAAATGAATTACAATCCGGAGAAGTTTAAGTTGTCTATGCCTTTGATGGAGTTATTAGGGATCGAAGTCGATTCCAGGGCTAGGATAATTACGGGGATATGGCATTATGTTAAGGCAAAGAAGTTGCAAATGCCTAGTGACCCTACTTATTTTACTTGTGACCCATTGTTGCAAAGGGTTTTTGGAGAAGATAAGATGAAGTTTTCTTTGGTTTCACAAAAGATTTCACAACATTTGTCATCTCCACAGCCTATCGTGTTGGAACACAGGATAAGGGTTTCTGGAAATGGTGCCATGGGGAATTCATGTTATGATGTGATGGTTGATGTTCCCTTTCCTTTGCAGAAGGAGATGTCTGCTTTTCTGGCTAACACGGAGAAGCATAAGGAAATCGAGGCTTGTGATGAGGTGATATGTGCTTCAATAAAGAAGATTCATGAGCATAGGAAGCGAAGAGCTTTCTTTTTAGGATTTAGCCAGTCACCAGTTGAGTTTATAAATGCACTGATTGCATCTCAAAGTAGGGATTTGAAGCTTGTTGCTGGGGAAGCCAGTAGGAATGCTGAAAAAGAACGCCGCTCTGATTTCTATAATCAAGCATGGGTTGAAGATGCAGTAATTCGCTATTTGAACCGTAAGCCTCCAGGTGCCGCTGATGCTGCTGGGAGCACATGA

Protein

Gene

>AfisC2G03489
CAATTCATCTTCTTTTTACCTGCTCCTTTCATCCACCGCGGATCTCCTCTTTCCTAAACGCTCCATTTTTTCTCACTCCTCGCTCGAATTCAAAGACTCTTATTTCTCGAATCAGCAAAATATCTAAATCCAATAATCTCCCCATGGCGTCAAACACCCCGCCGCAAAACCCTAACCTCCTCCGCTCCCTCAACGCCGCAGCTAACTCCTCCTTCTCCACTCCTCCCCTTAGTCAAATCTCTCAGCTCCACCGCCAAAACCCTAATCCTAACCCCTACCAACATTCCCCCAACCCTAACTCGTCTTCAAACCCTAACCCTAAATCTCGCCCGCCTCAAAAACCCAATAACCCCCCATCTTTCAAATCCGCCGAGCTGACCCCTGCCGCCCGTCGCACCAACAAGAAGCGAAAGCTCCCCGACAAGCAAATTCCCGATCGTGTTGCTGCACTCTTGCCTGAATCCGCCCTCTACACTCAACTTCTTGAATTCGAGTCAAGGGTGGATGCCGCATTGGCCAGAAAGAAGGTTGACATTCAGGAATCGTTGAAAAATCCACCATCTTTGCAGAAGACTTTAAGAATTTATGTTTTCAACACATTTAATCCGGCAAAGGTCAGTGAACCTGCATCATGGAGTTTAAAGATCATTGGGAGAATTTTGGAGGATGGAACTGAAGAGAGTGCAGGGAGAGTAAATCCAAATTATCCCAAGTTTTCTTCATTTTTTAGGAGGGTTAGGATTGATTTGGACCCGATTTTGTACCCAGAGAACCCAACAATTATTTGGGATAATGCTAGATCGCCTTCGCCGTTGGAAGGGTTTGAAGTTAAGAGGAAAGGAGACAAAGAATTTAATGTTACGATCACATTGGAAATGAATTACAATCCGGAGAAGTTTAAGTTGTCTATGCCTTTGATGGAGTTATTAGGGATCGAAGTCGATTCCAGGGCTAGGATAATTACGGGGATATGGCATTATGTTAAGGCAAAGAAGTTGCAAATGCCTAGTGACCCTACTTATTTTACTTGTGACCCATTGTTGCAAAGGGTTTTTGGAGAAGATAAGATGAAGTTTTCTTTGGTTTCACAAAAGATTTCACAACATTTGTCATCTCCACAGCCTATCGTGTTGGAACACAGGATAAGGGTTTCTGGAAATGGTGCCATGGGGAATTCATGTTATGATGTGATGGTTGATGTTCCCTTTCCTTTGCAGAAGGAGATGTCTGCTTTTCTGGCTAACACGGAGAAGCATAAGGAAATCGAGGCTTGTGATGAGGTGATATGTGCTTCAATAAAGAAGATTCATGAGCATAGGAAGCGAAGAGCTTTCTTTTTAGGATTTAGCCAGTCACCAGTTGAGTTTATAAATGCACTGATTGCATCTCAAAGTAGGGATTTGAAGCTTGTTGCTGGGGAAGCCAGTAGGAATGCTGAAAAAGAACGCCGCTCTGATTTCTATAATCAAGCATGGTAGTTTTCTTAACTCAGACTAGCTATGTTAATTTTACACAGGTCCATGCTCTCAACCACCCCTGTTTGCGTCCTCATAGCATTGATGAAATTTAAAATGGTTTCTTGTTGGCCCACTTGCTCAGTCCCTTGCAAATATCTGCAGAATAATCTAGATAATGACTCCTTATACATTGTTCACCTGAATTCTTAAAATGTTACTATTGTCGTCATTTGGTGTTCCTTTTACATGGACATGAATAACCATTCTCATTAAGATCTAGGCATGCCATATCCTTCATTATAAAATCTATTTATATATTCTTGTCTTTGATTTTTTCACTTGATTTTCACTTTTGTATGCTCATATCTGAATAGTTGAGGTCAGCTTTACAGGAACTTGGCCAAAACATTTTCTCTTTATAAAGCTTGACCGAGCCATTGTAAATGGTTTGCTCATATGTTTTTATGAAGTCATATCAATGTATACTCGAATGTTTATGTTTCTCGGCTTTTTCTTCTTTTAATAATTATCACACATGACCCCCAAGGTAGTGCAGTGGTTAGGACATGCGGCGCTCACCTAAAGGTCGAGGGTTTAATCCCCACGAACTACATATCCTTGTAAATTACCTGAAGTATGTGTTGTGGATTCGGTGCATACTTCTTTAGAGTTTACAAGCAAAGCTTGGTTCTCTAGGTCTTCAAAAAAAAAATATCACACATTTAAAACAACAGTTACATCTTTACCATATTTGTCATACGCTCACGTTTATTCATGATAGTCTAAACCTCAGTCATTAGAATGCTAACAGAAAAAAGATATTAGAAACAAAAGATACAGTGGTTCAGTTGTATGCAATTACTATTTTAATCCCTCATTTTGCTTTTAACCTCCTTTTTCTTTGTCGACAATTTTACCCCTTGTTTTTTGTATTTAACCTCGACGTTTTCCTTAAAATTGTTGTCAAAAATCTTAAAATCCTACGATTTATATCCTGTTTCAGATCGAATCACTTCTTTTACGATTCGATTTACATTCCGATTCAAATTAGTTAAAATCGTAGTAGAGAAAATTCATTCAATACATGTTCATATATTCAATATACTTATTTGAGTCTACAACTTGAATGCTAAGTTTTCTAAACAAAATAAAATGGAACAAAAGAAGGAGAGAAAAATGAATTTTAGGTTTAGATGTAGAAGTTCAAACATCAAAATCAATTTCAAAATTTATACGAATCTTAAGCTATGGATCTTTTGAATCCACTATTTACGATTTAAATTCCGTTCGATTTAACATTTTAACTTTACGATTTACGATTTGAATCTCATTTTGATAACCTTGTTCCTCAAAATATCCTCACTTTAGTTCTCCCTTCTATTTCAAAGTTTGGATTGCTAGACCTTGTTTTTTTGGTGTCACGAGAGATTCGATTTGAGTGATGTTTTAGGCTGTAGATTGTTTCAAAATTTCAAGATTCTTTGAGATTTTAGAATTCGAGGGAAAAAAGACTGCAACTTAGTCGGTAGTAAATTATTTCATTTGAAGGGGCAAAAACAAAACTAGTAGTGCTACTAGAATTTCCATATATGTGTGTGTATGTACATGTAAGTATATATAGTATTGACATGTTGATTTAGACACAATGTTTATCCACTCTCCTTTTGTTTCTTCCGTTCTTTCGTATCTTCATGTACAATTGAAATAACGACGATGATTGATATGCAATCAATTTCTCAATTTCCTTTATCAGTATGAGAGATGAATGTAGTGCCTATACCATTTGGTTGCACCAATATGTCGGGCTGTGTAGATGGGGGGTTCTTTGATGAAATGGGTGGTGTTAGTATCGTTAGTAGGAGGGCATTTAGTGATTCTAAAAAGACACCTTTGAAATGTATTCATTCAGTTTCTTTTATAAATGTTGTAGATGGTGTGTCTAATGATAACAAATCTTTTCAAATCTATACATAGTATGCACATGAAAATTAAGCATAGTATAATGTATGCAGGGTTGAAGATGCAGTAATTCGCTATTTGAACCGTAAGCCTCCAGGTGCCGCTGATGCTGCTGGGAGCACATGAGCACTACGGAAGACAATATATCAGTTCGTGCAGTTTCAGTGAGTTCACTACGATTTATTCGTCTGTTCGTTTTTCTTGATATTGGATGTAGATATAGTCTATAGGCTGTCATGTTATTAACATTTTGAAAAAGTGATGCATGATGGTTTGATACTGTCTCTTTGACTCATTGTTTTCTTAACATACTGTTTTATTGGATTGTCTGTATTCTTAATGTTCAAATTACCCCCAATATAAAACTTTATCTAATGTCAGAGTATACATTCAGATGCTTCTACATTTTTACAATTTTACTACGACGTAGCAGTGAATGACATAAATCAAAATTTGACATTCAACATTGCAATTTGTTGACTGCCCAGATTATGTGCTATGTTTTGTCCAAGGCCTACCATCATTTCATTTTAGTACTACGCTGCCTAATAAATGTCAATCCATAATTTAGCTGTAGTCTCAAATCTTCCTCGAATTGCTGCTTATTATTTTGGTTCATCATGTTTGGTTTGAATGGTTATTTATTTATTTTTTGTTCCACTGAATTATCCATCTCCCCACTGATTTGAACAGTTCATCATATGCTATGGTTTGAATGTTATTTATGTATACGTCAAATGTTATGAACAAGATCATCACAATCTTTTATGTCAATGTCATTTTCAAGTTCACTCTACCTATTTATAAATCCCAGGAATCTGTATTAAAAAAACTGTAAAAAGAAGCTATGGGGCGTTTGTGTTTTCCTAAAAATATAATAATAAAATAAATAAAATAAAACCCTTAAAAATTCAGTCAGATCAGTCAAATGTCAAATATACATCAGAATGTAAGCCGTGCTTGATGTTGATATTGATCAGAATATACAACAATAAGTTAAAATTAAGTGTGGTGTCACAACTTCTCATAACCAGTATGAAACCAGTCAAACTTATGGAGATGTAAATATATGATTGAAAGAATATCATATTTTACATGACATCGAAGCTTTTTATATGAATATAGTAAACGATCGAAATGGAAAGGGCAACTTACTTGATGTTGATATTGTATGATGCACGTATCAACTTTCACCATTCTGGTATACAATTTGTGCGAAAGATGAATAGGAGGACGCATTCCCACAGATGGGAATATCACCAAGTTGAGTAGGATGAATATTTGTCACAGACCTTCGTCGAATCCTATGTAGAATATTTTGTCATTCAGATTCGTCCTCCTTTTTCTTATAAAGAAATTGAAGTTTTATATATTGACGATGAAATAGGACATGTCTTAGCTGTCCAATTTGATATAAAAAGAGTCTTGGTGATTCAACAGTAACTAAGGGGTGATCATATAAATGTTGAGCTAAATTTGTTTTTGTGGTCTGTCACTTGTAAACATAGAGTTGAAATGGGAGTGGAGATGAAGCGATAATCAAGAAAGAATATTTTGTGCAGTCGAAAATCTGAAACAAAATGAGATTATGTTTTACTAAAATTACGTTTATCAGTACTAAAACAATTTAAATATCAGTTGGAAGTTATGGTGTTGGTTTTTATTCATTATTACTTGCTTTTAACGTAGATATAATTTTGAAATTGCATAAGTCAAAGCTTAATTTTGAAATTGGGAGAACCACCTTGGTTTGCTGACAAAAGAAGATGATGAATAATTTATTCTATTTCTTGTTCATTCGCTTTGGCAACATCAGGAGGAAACTCTCCAATCTATCATTAGACAATTTGTTTTTAATATTTTGGTTGCATTATCATAAATGTTACGGTTATAAGTGGGACATGTTCCATCCACTTTGGAACATTGAAATGTGCTGTGACTGTGAGTAGCATCTGGGTAATGGTGTTGTCGTATGACCTTTTTTTTCTTCTTCCCTTTATGGATAAAACTACCTTTTACAAAAGACTGGCTTGGATGATGACATCTACATTTTTTTTGGACTTTAGCAAAAAACTTGAGTTTAGTTTTTATTTTTATTTATGACACACACATCACAGACGTGTGTGTAATACATATATAGTTATGTCGTAACCAGATACAAGGCTGGACGATTTTTGTTTTATTATCACATGAATTTAATTGGTTGGAAGACAATAATTTTTTTATTCTAGGCTGTATATGGGTTCCAACCTGTATGTATTTGTTGTGTAATAGAAAGCTGCTGATGACTGAGTTTTTGAACAAATTTAGTTTGCAAGCTACGGGGTGATAAATTTCAGCTGACTGTTATATTCCTTCGTTGGTAGAGTATTTAAAATGTCTATAATATTATATATATATATTCTAACTGGTGTGTGCTGGTAGAATGTCTAGGGAATGTATTGTCAGCTTGAAACATGTTTATAATTTATGAAGAGTGCCTTGGGTTTGGCTTACAAATGAAAATACCATATTTCGGGCATTTCACCAGAAGGACAAATTTTACCTTCCAATTAGTTTCTAGGACAGACATTCAATGAAATTACTTTCAAGGCCAAAATCAGCAGAATAATTACTTTCAAGGACAAAGTGTAGTCCAATTAATTTCAAGGACATAATTTCATAGGTTTTTAGGCCCTAGAAACTAATTATTTTACGTTTTGTCCTTGAAAGTAATTATTTTAGTTGTGTGTCCTAAAAACTAATTCCATCTGCTAAAGAGGTCCTTGTGGCTAATTTCCACATTTTTTTTCTAATTTCCACATTTTTCATTTTTTAGTTATCTATATTTCCACGATGCCCTATATAAAATTGCATGCAACTCAGGATGTTTTTCCTCACCTTTTCTTCCGATTAATTATATTTTCATGTTATTTTTTGCAGGTTAGAGGTGGGAATGTTTGGTGGCTGGAGAACAAGGAATTTATGCATATATGCATTAATAGTACATTTTCTCGTGTTTGTCTGTATATTATTTCCGCAGATGCGAAGTTATTTTATCATGACTTAAGAATCAGTTTTTGTTGCTGTCGGTTTGAACATAAGATTGAAGCTCGTCTCTTTTGTATCTTTATCAACTTGATATGATGGCAGTCAGGCAAATTATTATATATAAAATAATGAGTCTATGCCAAAATGATTTTGGTTGTTTGGACACAAGAACTGAAAGTTTATGATAATGAACGCTACT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008788860.1	6.1e-185	SWI/SNF complex component SNF12 homolog
Swissprot	Q9FMT4.1	6.6e-160	SWI/SNF complex component SNF12 homolog
trEMBL	A0A8B7C041	4.4e-185	SWI/SNF complex component SNF12 homolog

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G14170.1	67.22	2e-165	578	CHC1	SWIB/MDM2 domain superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03489	AT5G14170.1	424	119	6	59	466	114	533	67.22	2e-165	578
AfisC2G03489	AT3G01890.1	408	130	6	59	460	53	458	66.18	2e-151	532

Ortholog group

Species	Genes
Allium cepa	g84319.t1
Allium fistulosum	AfisC2G03489
Allium sativum	Asa0G05836.1
Arabidopsis thaliana	AT3G01890.1; AT5G14170.1
Oryza sativa	LOC_Os04g31320.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02201.15	SWIB	Domain	251	322	70.6	6.9e-20

Gene Ontology

Accession	Ontology	Name
GO:0000790	C	nuclear chromatin
GO:0002052	P	positive regulation of neuroblast proliferation
GO:0003407	P	neural retina development
GO:0005829	C	cytosol
GO:0005654	C	nucleoplasm
GO:0005774	C	vacuolar membrane
GO:0006281	P	DNA repair
GO:0006337	P	nucleosome disassembly
GO:0048096	P	chromatin-mediated maintenance of transcription
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006886	P	intracellular protein transport
GO:0006897	P	endocytosis
GO:0008134	F	transcription factor binding
GO:0009506	C	plasmodesma
GO:0009909	P	regulation of flower development
GO:0010224	P	response to UV-B
GO:0016514	C	SWI/SNF complex
GO:0016569	P	covalent chromatin modification
GO:0016922	F	ligand-dependent nuclear receptor binding
GO:0030130	C	clathrin coat of trans-Golgi network vesicle
GO:0030132	C	clathrin coat of coated pit
GO:0030374	F	ligand-dependent nuclear receptor transcription coactivator activity
GO:0032947	F	protein complex scaffold
GO:0035257	F	nuclear hormone receptor binding
GO:0048364	P	root development
GO:0071564	C	npBAF complex
GO:2000024	P	regulation of leaf development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11650	SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D	EC:-	Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network