result

Gene information

Detail information of AfisC2G03514

Location

Gene	Chr	Start	End	Strand
AfisC2G03514	chr2	553019739	553021593	-

Sequences

CDS

Protein

Gene

>AfisC2G03514
ATGTATTCCCTATACTGGGAAACCAAGCAATTTTATCAAAAGCTTGATAGGTACATATATACACTTATATTTTCTTCATCCAATTTATTTAATTACTTCTTGAGCTGCATGTAAATGTTGATATTAATCGATTTTAATAAACATTTAGCTGGGGAATCGATGATGTGTTCTTAAACTATGAGTCAAGCAGCTCGCCTGAAGGAACAACAGATAACGCTCCTCCTTCTACTTCCATTGTTAATGCAGGAAAGAATATAATAATGGAAAGAAATAGGAGAAGAAGGCTCAATGATAAGCTATATGCTCTTCGTAGCCTAGTTTCAAATATTACCAAGGTATTATATGATAACAGTCCGTAAATTAAAACACAACTTGTATTGACGATATTTAACTAATAACAGTGGTTGAATATCATGATTTGGGTTCAGATGAACAAGGCATCAATAATAAAGAATGCAGTCGAATACATTCAAGATTTGCAAGAACAAGAAAAGAGGATTTTAGTTGAGATCGATGAATTGGAATTAACCAAGGCACCAAAAAAGCAATGTTGTAGTGGTGTTCCAAAAAGGAGAAACATGAACACCATTGAAGTTACAGAGGTAATTAAAATTGGGTTATTTTGATTTCATTCAGTATTTGATTCAATAATGAACTACGTTTTATTCAATATTTCAATTATGTGGCAATGTAGACGAAGATAAGAGAAGCAGGGGAGAAGTCGATGGTGATAAGTATAACATGCAATAAGAAGAGAGGAACCACGGCTCTACTGTGCGAGCTCATTGAGTCTCTTAACCTTAAAATCATGAGCACAAATATCACAACTGTTTGTGGCAGTCTTTTGCATACTTTATTCGTGGAGGTAAGAATTTCCCCTCTGATTTGTAGTTCCATTGTTATCCATTGTTGGATTATCACCGATAAACAAGTATATATCACTAAAATCTAATCAGTTGATAAGCAGCTTTCAAGTTTGATTGGCTTTTACTATAGCATTATATTTAAATAACAGTACCATCTACCGCAGTGCGTCGGGCTTAACGTATTTGAGATTGTATATCTTTGCAACTTGAAGGACTAAAATAGGAACACGATAGTTTCGCAAAAATAATGAACTAAATATGAGTAAATAATAAAATGAATACTGGGTGGTTAAGTCTAATATATTGTAGCAATGGGGATCATGTCAAATAATCCCAATTAACTTACTTTCCATTGATTGTTACAACAAAACTCTCCTTTAGAGCTGTTGTGATAGCTTACAGCCATAAACTATTAGTCCTAAATATTTCTTAAGTCATTGTCATATTTCTGCCTTGTTTCGTTTCATTGATTGTAGTAGGATATTATTAATTTATCAATTAAATAACAGTATCATTTAGGACTAATATAGTGGAAATATTAGTGCAGTTATGTTTCAGATATTCATCAACTTGTTGACGAATACAAATTTGTGAATTAGAGACAAGTAAATGGGGCCCCTGAAATTTACACTATTTGGAATTTTTTTTTTTGCGTGTCCATAGATGCTGGTAACGATAGATATTTTTTTATACATGTTGTGCACAAATGAGTTTAAGTTTTTCTACCAACTTTACAAAAGGAAAGGCAACTATAACCAGTACTTGGTTGAAGATGTTTTCAAATAAACTATCTTCCAAGAAAGAGGAGTATAGGTTTTATTGTTGGCTAAAAATTAGTGTATCCTGTATCTAGGATCTTTAATTTTCCATTATTCCATTATGATGTATGCTTCTTCCATTACTTGCAGCAACCTACACTCAAAACAAATATCTCTTTTGTATAACAGGTTCTGCAACACCTTTTACTTGGAAAAAATCAGAGAAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267843.1	1.7e-46	transcription factor bHLH35-like
Swissprot	Q2HIV9.1	3.2e-34	bHLH transcription factor bHLH035
trEMBL	A0A5P1EUS4	1.2e-46	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57150.1	43.19	3e-40	161		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03514	AT5G57150.2	214	88	7	5	195	12	215	43.46	3e-40	161
AfisC2G03514	AT5G57150.1	213	89	7	5	195	12	214	43.19	3e-40	161
AfisC2G03514	AT5G57150.3	214	89	7	5	195	12	215	42.99	4e-40	160

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	52	97	43.6	1.9e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0010440	P	stomatal lineage progression
GO:0050826	P	response to freezing
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0034756	P	regulation of iron ion transport
GO:0048657	P	anther wall tapetum cell differentiation
GO:0071281	P	cellular response to iron ion
GO:0071369	P	cellular response to ethylene stimulus
GO:0071732	P	cellular response to nitric oxide

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network