Gene information

Detail information of AfisC2G03560

Location

Gene	Chr	Start	End	Strand
AfisC2G03560	chr2	558931761	558932414	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244599.1	2.9e-26	myb-related protein 308-like
Swissprot	A0A4D6Q4S0.1	3.6e-21	Myb-related protein 1
trEMBL	A0A8B8Z9E3	1.2e-26	transcription factor MYB1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G35550.1	38.85	3e-21	98.2	ATMYB123;ATTT2;MYB123;TT2	Duplicated homeodomain-like superfamily protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03560	AT5G35550.1	139	70	3	7	140	63	191	38.85	3e-21	98.2
AfisC2G03560	AT4G38620.1	56	15	0	7	62	61	116	73.21	2e-20	95.1
AfisC2G03560	AT2G16720.1	56	14	0	7	62	61	116	75.00	3e-20	94.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	13	58	48.0	9e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006633	P	fatty acid biosynthetic process
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0010023	P	proanthocyanidin biosynthetic process
GO:0010090	P	trichome morphogenesis
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0045165	P	cell fate commitment
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048765	P	root hair cell differentiation
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network