result

Gene information

Detail information of AfisC2G03655

Location

Gene	Chr	Start	End	Strand
AfisC2G03655	chr2	579843038	579844753	-

Sequences

CDS

Protein

Gene

>AfisC2G03655
AACATAACATAACATAACATAACATGGGTAGATCTCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCTTGGACTAAAGAAGAAGATCAAAGGTTGATTTCTTACATTAAACTCCATGGTGAAGGATGCTGGAGATCTCTTCCTAAAGCTGCTGGTATTACTTGCTCCTCCGCTTATCATTACTCTACTGTAAACAATACTGGGCTTTTTTTAATCTGTTTTCAATGTAAAGGTCTGCTTAGATGTGGAAAAAGTTGCCGCCTCAGATGGATAAACTATCTTCGCCCCGACCTCAAGAGAGGCAATTTTACAGAAGAAGAAGATGAGCTTATTATCAAACTTCATAGCTTGCTTGGAAACAAGTAATGCAATTATTTATTTCTTTTTGTTACTCTGTTTTGCTTTCTAAACCATGAATACTAAACCTTTATTTGTTTATTTCTACGTAGATGGTCGCTTATAGCAGGAAGATTACCAGGCAGAACAGACAACGAAATCAAGAACTACTGGAACACACATATAAAGCGCAAACTAATTAGCCGAGGAATTGATCCACAAACACACAGTCCAATCAATGCATTCTCCAAGAAAGAAGTGCAACCAAATCAAGAAATTAACACAGTGCGAAATGTTATGATAAAAGAAGAGGAATCAAGCAATGGAGCTGCTCATAGCTGCAGCGATGACGAACAATATCAAGATATTAACTTGAACTTGTCTATAAGTCTTCCTAGCTACCAATCTTGTTCTCCCAGTTCAAAGTCTTCGCAGTCCATGAATGCAAATAAAAATATGGAAACCGCATCAACTATTTGCTTTTGTTACAATCTTGGGTTTCAGAATAGCGAGGCTTGTAATTGTAAGGAGTTGCAGAATCCTAATTTGTTCAGATTTTATAGACAATTTGAAGGTGGGTATAATGCTACTCATATTTAGGCAACTTTTTTTTGGGTATAATGTTATGCTGAGAGAGTTTGGAGATAGTTAAAAAAAATTATGTTCTTGATACTCTACCGCTATATTTTGCCTTGCATGTTACATTCCACTTTATGTTCATTATGTTGCTCGTATGAATATTGTTAAGGAGTGTTTAACTGGTTTTGAACAACTTAATTTACTGATGGACAGAGCTTTCTGCTCTATGAAAAGAAGCAATAGTTTTTCTGTACAAAACTTGGTACAACAATCTATTATCCAAATACTATAATATGAGGTAAAAGATATCTCCTTACAAGGTGCCAAACCATGTAGTAAAGTAAATTTAGGTAAACATTTCTGTTACCTTCGCACTCTGGAAACTTGTACATGATTGATTGTATATATCTGTTAGCATTTGAACCTTGCACTATTTTAAGTTTGCATTTCGTGGTAGACCCTTCAGGGGCCGACTAACTACCCGTGCGGATCGACTAGCTCGTCTTCTATCTATCTCGCATGGTGTGTCCCAAGCCAGGTTGGGTATAGGTTGACTGTTGTCTCCGACTGTGGTCTGCTTTAGTCGGTCTGTCCCCACCCCCCCTTTACTGTTGGTTTTTTTTTAATGCGTTTGTTAGTTTCTCAGTTTCAGGTTCTTTGGCAATCTATTGGCCGGGGTCAAGTATTGATGTCTAGGCTCTCGAACCGAGTCGCTTTTTGTTACTTCTTTGGGGGCTTTCTTCAGCTCTTAATCTTGGTTCCGCTCTCACTGCGCCTCTCTGTTCGCGCGTTCTGCGGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246745.1	8.0e-78	LOW QUALITY PROTEIN: myb-related protein 308-like
Swissprot	P81395.1	2.9e-72	Myb-related protein 330
trEMBL	A0A4S8ILI9	1.3e-74	Myb-related protein 308-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38620.1	56.69	8e-74	273	ATMYB4;MYB4	myb domain protein 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03655	AT4G38620.1	254	74	4	1	229	1	243	56.69	8e-74	273
AfisC2G03655	AT4G09460.1	208	49	4	1	184	1	208	64.90	5e-71	264
AfisC2G03655	AT1G22640.1	254	79	7	1	226	1	250	56.30	3e-70	261

Ortholog group

Species	Genes
Allium cepa	g113430.t1
Allium fistulosum	AfisC2G03655
Allium sativum	Asa5G03132.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	58.3	5.7e-16
PF00249.28	Myb_DNA-binding	Domain	67	111	62.3	3.1e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network