result

Gene information

Detail information of AfisC2G03818

Location

Gene	Chr	Start	End	Strand
AfisC2G03818	chr2	609754398	609755768	+

Sequences

CDS

Protein

Gene

>AfisC2G03818
GGATAACCTTGCAAGTGCTTATGATCAATCTGTAGCACTGTACTATATATTATTATTATTATTATTATATTTAACGTAATAAGACACATAATAAGACAGCGGCGCGATTCAACACGACATATACTACACAATTCAAACATAGGTATGTCTGCTCGTAGATCAAAGATGTTTGTGAACAACAGTAATCATATCACTAATTAAGTAATATACTAATGCATAATGATAATAAAGTTAGCGACCTTGCATATAAAATAGGTATGAAATTAAGAAAAATCCACCACTCATATTATTATATAAGCACTCATTTATTGACTTCAAGACTAAAAGTTAAGCTCAGTCATATATAGTGGCAAAACTGTGATCTATAGAAAGAACAAAAGAGAAGAAGAAGTTAATTAAGTGAGATATATATGAATATGGACATGAGTAGCACACGAGTAGGAGTCAAATGTGGGCGTTGGAATCCAACAGCAGAACAAGTTAAAGTTCTGACTGATCTGTTCAGTTCTGGGCTGAGAACACCGACAACCGAGCAAATTCAAATGATATCAACTCATTTGAATACTTTCGGAAAGATAGAGAGCAAAAACGTATTTTATTGGTTCCAAAACCATAAAGCTCGTGAACGACATCACAAGAAGAGGCGCAGAGGAAGTGGTGGCAATGGTGATGAAGCTATATGCAACATGATTAGGGCACCAGAAAAGAAAGAACCAAAATGTAGGTGCTACTGTTTATTTTTGCATGTTTTGGCTTTGTCTATAACGTTTTTGAAACATAAACACCAATTATTTTGATACCAATAGTCTAAGCATGCATACAAGAATGTAAGAATTGATGTTAATTTCCCATGCATTAAAAAGTTTGTAATACATGTTATCTATTTCATTAAGAAAACTAGTCGTGATCATAGAATAATGAAATACAATATTCTCGTTGTAATGAATACTAATGGACATACTGTGCTATCTCCTATCATAGTTCAGATTATGCTGGTAAGCATACAAGTCGATCTTACAGTTTTCATATATTTGATATTTAGCTCAGAAAAAGATGCAGAAACCCAGAATTTAGTAAGCATAACACGGATATTTTGATTCTTAGATAACAGTAAGCGATGTCGCATTATGCTCACAATACTGTTTCCTTAATGCAGTTTGTGCCAAATTACTCGAACAACAAGCGATAAGGGAAGCAAAAGATCAGAGCAGGCGAGTGGAGACACTGGAATTGTTCCCACTTAGTTCTTACAGCTACGAAGGCGAAAAGTGGCAAAAAGTGAGTAATGAATGGCGAGAAATACCATTTATGTTTGAAGCTGATATCGTAAATAAAGAGCCACCATTAGATTTGAGGCTCAGCTTTTTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008785588.1	5.3e-33	WUSCHEL-related homeobox 9-like
Swissprot	Q8W0F1.1	1.7e-31	Quiescent-specific homeobox protein
trEMBL	A0A8B7BUG8	3.8e-33	WUSCHEL-related homeobox 9-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G11260.1	44.13	8e-33	136	WOX5;WOX5B	WUSCHEL related homeobox 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03818	AT3G11260.1	179	72	5	10	174	18	182	44.13	8e-33	136
AfisC2G03818	AT5G05770.1	63	14	0	12	74	25	87	77.78	3e-25	111
AfisC2G03818	AT3G18010.1	68	30	0	16	83	76	143	55.88	5e-19	90.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	14	74	61.2	5.5e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009880	P	embryonic pattern specification
GO:0008283	P	cell proliferation
GO:0009536	C	plastid
GO:0009733	P	response to auxin
GO:0009908	P	flower development
GO:0009943	P	adaxial/abaxial axis specification
GO:0009947	P	centrolateral axis specification
GO:0010067	P	procambium histogenesis
GO:0010078	P	maintenance of root meristem identity
GO:0010865	P	stipule development
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0051301	P	cell division
GO:1902459	P	positive regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network