result

Gene information

Detail information of AfisC2G03841

Location

Gene	Chr	Start	End	Strand
AfisC2G03841	chr2	615166968	615168350	+

Sequences

CDS

Protein

Gene

>AfisC2G03841
AAAAAAAAGGAAATTCAATTGATGAGTAACGGATCCTATAAAATCTCGCGGACTGTTGGCAGTCTTGAAAGCTTTCCTAACTATCTATAAATTTGAAACAGATACATTCATTTCCATTTTACATCCCTCTCTATATTAATCTTCTTCTTCACCTCATACCAAATCGTGTGTGATTTTATTCTCTCCTTCTGCTTTCTGCTGCACTAAACCCATAAAAGGTTTTAGCCATTTCTCTCAAAAGCATTCGCTTTCTCCTCAAAGTTTCATTGGATTCTTTCCGAGAAACTCACTCTTATCGTCTCTCTCTCTCTTTCTCTCTTTATAAAGTTTAAACCACTCTTTTAAATGCTATTTCTATAGTTTTTTTTTTATCTTCAACAACAACAACATGAGTTCGGAATATCTATTTAAATTCAGAGTTTCAGAAACCGTGAACAAAATCACGACCACTTTCCCCAAATCGAAATGGCTTAAAAAACCCATACCCAAATCCATCAAAATCCACTTCGACGACCCCTACGCCACCGATTCCTCTTCCGACGAAACTGATTCCGACACCCCCAAACTCAAACGCTTCACTCACGAAATCATCTTCCAATCCAACACGTCCTCCTCGAAATCCAAATCGAAGCCTATAAAGGAAAAACCTAAACCTGAACCCCGCGAAATAGAAAAACCTAATGCAGAGCCGAAGAAGTTCAGAGGCGTTCGGAGAAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGAGATCCATGGAAGCGATGCCGCGTTTGGATCGGTACCTACGACACGGCCGAGGAAGCCGCGAAAGCTTACGATTCAAGAGCTATTCTTTTACGTGGCCCCTCCGCCATTACTAATTTCGTACAGCAAACGGAGGAAGCTAACGTTGCTACGACGTCGTACACAAGCGAGGAGTTTAGGAGTAGTAATTTGCCTTCACCAACGTCGGTGCTTCAGGACGAGGATTTGAAGAACGAGAAAGTATGCGAAGCAGATGCGGTAGACAGGGAGGAGGAAATGGTATGCTTACCGGATTTGAGTGAGTTCATGCCATATGAGGAACTGCAGCTGTACAATGATTTTTTGGGGATGGAGACGATAACGGAGCCTAGGGTTTATGAAGATGCGAAGATGGTGATGGACGGTTGTGATTTGATGAGGTGTAGTTGGGAAGGCGGTGATTTCTTTGATGATATCGGCGATTTGTTTATGGCTGAAGCAGGAGGAGCCGTTTCTCCTTCTTCTATGTAGGAGCGTGAACAAGTCTGTGTAGTTATGAGTTTGGCGTTTGACGCCGGATGTCGATTTATCGGCTGATTTTGTAAGGTTTTTATCTATTATATTTACTAGTTTTTTTTTTTGGTCCCTTAACTATGCTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010915710.1	3.9e-33	ethylene-responsive transcription factor CRF2-like
Swissprot	Q9FK12.1	1.2e-21	Protein CYTOKININ RESPONSE FACTOR 3
trEMBL	A0A6I9QV73	2.8e-33	ethylene-responsive transcription factor CRF2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G27950.1	43.35	2e-26	116	CRF4	cytokinin response factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03841	AT4G27950.1	173	79	6	36	190	43	214	43.35	2e-26	116
AfisC2G03841	AT3G61630.1	172	79	5	33	191	28	196	44.77	5e-26	115
AfisC2G03841	AT4G11140.1	177	87	5	29	191	6	180	41.81	1e-25	113

Ortholog group

Species	Genes
Allium cepa	g108439.t1
Allium fistulosum	AfisC2G03841
Allium sativum	Asa6G01488.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	103	147	45.2	7.3e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010186	P	positive regulation of cellular defense response
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0090332	P	stomatal closure

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13434	PTI6; pathogenesis-related genes transcriptional activator PTI6	EC:-	Plant-pathogen interaction	ko04626
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network