result

Gene information

Detail information of AfisC2G03939

Location

Gene	Chr	Start	End	Strand
AfisC2G03939	chr2	634069983	634071607	-

Sequences

CDS

>AfisC2G03939
ATGGAACCAAAAAAAGTAAAGCTCCTCATCGCCGTATCAATTATCTCCTCCCTACTAATAATCCTACCGATACTATGGAGACTACTAGGCTTGTCCAAAACGTTCTTTCTAGTCTTTGGAATCTCATCCGCTGTAATCATCTCCATCCTTCTATGGCTACTGTCCATGCACATATCAATTGATCGTACAACAATCCTAAATCTAAGACAAACGGCTGAAGAGATTCGTTTAGAATACAGTTTTCTGAGAAGAGTGGCAGGCCTTCCCGGTAAAATTCCTTTTCATGTTCTCGAGGCCGCTACTGACAACTTTCGTGCTCTTATCGGCCGTGGCTCGTCTGGTTCTGTGTTCAAAGGCATTTTGGATGACGGAACAGCAGTAGCGGTAAAAGAGATAAACGGATTGGAGGAGCAAGGAGACAAGGAATTCCAGTCTGAAGTGTCGGCAATAGCAAGCGTGCAGCATCTGAACCTCATTCGCCTATTGGGCTACTGTATTCTACCCAAAGGCGGGCCTCGGTACCTAGTGTACGAGTACTTGTCAAATGGATCCCTGGACAAATGGATATTCAACCCGACCCGATTTCTATCATGGGCACAAAGGTACCGTGTGGCTATCGATGTGGCAAAAGCTCTGTCGTACCTGCACCACGACTGCCGTGCTAGGGTTTTGCACCTTGACGTGAAGCCGGAGAACATACTTTTGAACGAAAGCTTCCGTGCAGTCGTATCTGACTTTGGGCTGTCGAAGATAATGAAGAGGGAAGAGAGCAGAGTGCTGATGAAGATAAGAGGGACGAGAGGGTACTTAGCACCGGAGTGGGTGTTAGGTCAAGGAGTTACCGAGAAGTCGGATGTTTTCAGTTATGGGATGGTTCTTTTCGAGCTGGTAGGAGGAAGAAGAAATATGTTGATAGAGGGAAACAAGGTTTCGTATTTTCCGAAGGTGGTGAAGGAGAAGATGAAGGAAGGGAAATGCATGGAAGTTGTTGACAAGAGAATGCTAATGGAGGAGGAGATAAAGGAAAAACAGGTTAAGGATTTGGTAAAGGTGGGGTTGTGGTGCGTGCAGGAGGAGAGTGGGATAAGGCCGAGCATGGCGAGAGTGGTGGATATGCTGGAAGGAAGGATTAGGATCGATGAGCCGCCTGATACAGAAATGGTTATCGTTGATGTTTTTGGTATTGATATTGGAGATGAAGGTTCGGGAGTGGAGGAGGGAGTGAAAGGTTCGAGCTGTTCTTCCTTTACCACTGTTTTGTCTGGTCGTTGA

Protein

Gene

>AfisC2G03939
CGAAATTATAATTTCATCTCCTTGAAACGGTCTCCTTGAATTAGTCTGCTTCATTTCTTAATTTTAATTAAACAAAACAATATAATCACAATTCAACCTTTACATGCCATGATCTAATCACAACAATCACCAACATTCTCCGTCTTCTAACCACTTCCTTAATGGAACCAAAAAAAGTAAAGCTCCTCATCGCCGTATCAATTATCTCCTCCCTACTAATAATCCTACCGATACTATGGAGACTACTAGGCTTGTCCAAAACGTTCTTTCTAGTCTTTGGAATCTCATCCGCTGTAATCATCTCCATCCTTCTATGGCTACTGTCCATGCACATATCAATTGATCGTACAACAATCCTAAATCTAAGACAAACGGCTGAAGAGATTCGTTTAGAATACAGTTTTCTGAGAAGAGTGGCAGGCCTTCCCGGTAAAATTCCTTTTCATGTTCTCGAGGCCGCTACTGACAACTTTCGTGCTCTTATCGGCCGTGGCTCGTCTGGTTCTGTGTTCAAAGGTCATTGTTCTTTTACCATTAATTTTTATACAGTAGAGTAAGAGTGCAGGTCCATCAATGACGGTCTTCCCTTTACAGGCATTTTGGATGACGGAACAGCAGTAGCGGTAAAAGAGATAAACGGATTGGAGGAGCAAGGAGACAAGGAATTCCAGTCTGAAGTGTCGGCAATAGCAAGCGTGCAGCATCTGAACCTCATTCGCCTATTGGGCTACTGTATTCTACCCAAAGGCGGGCCTCGGTACCTAGTGTACGAGTACTTGTCAAATGGATCCCTGGACAAATGGATATTCAACCCGACCCGATTTCTATCATGGGCACAAAGGTACCGTGTGGCTATCGATGTGGCAAAAGCTCTGTCGTACCTGCACCACGACTGCCGTGCTAGGGTTTTGCACCTTGACGTGAAGCCGGAGAACATACTTTTGAACGAAAGCTTCCGTGCAGTCGTATCTGACTTTGGGCTGTCGAAGATAATGAAGAGGGAAGAGAGCAGAGTGCTGATGAAGATAAGAGGGACGAGAGGGTACTTAGCACCGGAGTGGGTGTTAGGTCAAGGAGTTACCGAGAAGTCGGATGTTTTCAGTTATGGGATGGTTCTTTTCGAGCTGGTAGGAGGAAGAAGAAATATGTTGATAGAGGGAAACAAGGTTTCGTATTTTCCGAAGGTGGTGAAGGAGAAGATGAAGGAAGGGAAATGCATGGAAGTTGTTGACAAGAGAATGCTAATGGAGGAGGAGATAAAGGAAAAACAGGTTAAGGATTTGGTAAAGGTGGGGTTGTGGTGCGTGCAGGAGGAGAGTGGGATAAGGCCGAGCATGGCGAGAGTGGTGGATATGCTGGAAGGAAGGATTAGGATCGATGAGCCGCCTGATACAGAAATGGTTATCGTTGATGTTTTTGGTATTGATATTGGAGATGAAGGTTCGGGAGTGGAGGAGGGAGTGAAAGGTTCGAGCTGTTCTTCCTTTACCACTGTTTTGTCTGGTCGTTGAACTTGAATGTGGTGGAATTGAGGGTGGAATCGTTTCTTTCATTTGGCAAATGTGTTTTTGCTAATGTTTAGTTTGTTGCTCTATATTATTTGGTTAGTCGTTGTTGAGTTTCGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267949.1	1.3e-154	probable receptor-like protein kinase At5g20050
Swissprot	Q94C25.1	2.3e-111	Probable receptor-like protein kinase At5g20050
trEMBL	A0A5P1FUA3	9.6e-155	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G20050.1	52.85	7e-115	410		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G03939	AT5G20050.1	403	169	7	1	385	1	400	52.85	7e-115	410
AfisC2G03939	AT4G32300.1	353	184	7	70	415	461	808	44.48	3e-86	315
AfisC2G03939	AT1G34300.1	309	170	5	78	382	460	765	42.72	5e-74	275

Ortholog group

Species	Genes
Allium cepa	g118711.t1
Allium fistulosum	AfisC2G03939
Allium sativum	Asa6G01578.1; Asa6G01579.1
Arabidopsis thaliana	AT5G20050.1
Oryza sativa	LOC_Os06g05070.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	106	370	153.0	8.5e-45

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0004674	F	protein serine/threonine kinase activity
GO:0030246	F	carbohydrate binding
GO:0006968	P	cellular defense response
GO:0031625	F	ubiquitin protein ligase binding
GO:0044699	P	single-organism process
GO:0046777	P	protein autophosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network