result

Gene information

Detail information of AfisC2G04046

Location

Gene	Chr	Start	End	Strand
AfisC2G04046	chr2	655766551	655767674	+

Sequences

CDS

Protein

Gene

>AfisC2G04046
ATGAAGAAGAAATGTGGTGTGAATAGTTTATCGGAACGTAACAGTAATAACACATGTACTAATGTCTGTTTTAAAATTGATTATAATTTGCCATGGCATCCTTTAAATCATAGGTTACACTTTGTTTGAGCACCTTGGTGTGTAAAACCCAACCCTTTTCCCTTAGTGTCATAAAAATATGTGCAGATACCCCAAATTTGACTGTTTTTGTGATAATTTTAGGCAAGGACGCTTGATGAATCAAGATACATTTCCATAGATAACGCTGCAGCTGAAGAAGATTCAGAAAATAGCATCCTGATATCCCAAGAACCCCAATCGAAGAGCCCGTACAAAATATAGTGGAACCAAAACCCTCGTACGAAGAAGACTACTTCCGTGAGGTGTACGACCTCAAGTCCAAATACACAACATACGACACTGATAAAGAGACCATAATCCAAGATGGAAACACATCGTGCCTAGCCACCTGTAGTTCAGTCGACATCGAAGAAGACGACCCTTTTAGAGGGCAATCTTCTTACTCATACGATGAATCAGGAGGCGGTTTCACTTCATGTGTTGGTACAAGATGGTTCCGTGCTCCTGAGTTACTCTACGGTTCTACCTCTTATGGCCTTGAAATCGACCTTTGGTCCCTAGGCTGTGTTTTTGCTGAGCTTCTCGGTTTGGAAACTCTTTTCCCTGGAACTTCTGATCTTGATCAGTTAGCTAGAATTATAAACGTTTTGGGAGACATTAATGAAGATACATGGCCTGGATGTTCCAAATTACCAGATTATAACAAGATTACGTTTAACAAAATTGAGAATCCGATTGGGTTGGAAGGGTGTTTGAAAAATAGAACTGGTTCTGAGGTTAATCTTGTGAAGAAACTGCTTTGTTATGATCCTGCTAAAAGAGCTACTGCAGTGGAGTTGATGACTGATGGTTATTTTTCTGAAGAGCCGTTGCCGGTACCTTTGGATGAGTTGAGAGTTCCTGAGAAGAGAGATGATTGTGATGAGAGTTCGGAAGAAGAATGGGGAATTGGTAGAGAAATGGAGTCGGATTCTGATTTTGATGAGTTTGGAAAAGTCGATGTCGTGACTACTGATAAAGGCTTTTCTTTGAGATTTTTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247091.1	1.2e-100	LOW QUALITY PROTEIN: cyclin-dependent kinase F-1
Swissprot	Q5Z754.1	2.2e-91	Cyclin-dependent kinase F-1
trEMBL	A0A5P1FRV5	8.8e-101	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G28980.1	55.98	4e-83	304	CAK1AT;CDKF;1	CDK-activating kinase 1AT

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04046	AT4G28980.1	259	104	3	22	273	223	478	55.98	4e-83	304
AfisC2G04046	AT4G28980.2	259	104	3	22	273	223	478	55.98	4e-83	304
AfisC2G04046	AT1G20930.1	134	75	1	84	217	180	310	41.79	2e-26	116

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	81	213	71.6	5.7e-20

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000079	P	regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000082	P	G1/S transition of mitotic cell cycle
GO:0005515	F	protein binding
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008284	P	positive regulation of cell proliferation
GO:0008356	P	asymmetric cell division
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009793	P	embryo development ending in seed dormancy
GO:0010005	C	cortical microtubule, transverse to long axis
GO:0010078	P	maintenance of root meristem identity
GO:0010235	P	guard mother cell cytokinesis
GO:0010444	P	guard mother cell differentiation
GO:0010467	P	gene expression
GO:0019912	F	cyclin-dependent protein kinase activating kinase activity
GO:0040020	P	regulation of meiotic nuclear division
GO:0042023	P	DNA endoreduplication
GO:0045023	P	G0 to G1 transition
GO:0060271	P	cilium morphogenesis
GO:0098725	P	symmetric cell division
GO:1902806	P	regulation of cell cycle G1/S phase transition

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network