result

Gene information

Detail information of AfisC2G04090

Location

Gene	Chr	Start	End	Strand
AfisC2G04090	chr2	664458487	664460219	+

Sequences

CDS

Protein

Gene

>AfisC2G04090
CTTGCTCTGCATATATTCCTCCCTCGACTCCCTCAAAAGTCAACTCCTATTTTTCTCTCTCCCCCATTATTTTTTCTCATCCTCCCAAACTTTCTAACTCTCATCTCCTACAATGGACGCCGTCGACTGGGATCTTTCCGCCGTTGTCAGAAGCTGTTCCTCCAAAGTCAAATCTCAAAAAGTCAACGACACGTTGACTTTTCAATTCAAGGAAGTTGAAGAGAGAGAACTCAGAGAAGCGATGCTGTTTAGCGGGTTTCCAAACGGGTTCGGCGAGAGCTGCTCCAGATTTGTCGGGTTGGAGGAGCTTTGCAACCCGTTTATGCTATCCGTAAATAAGCAGTGTCAGAGTAACCTGCAGTTGTGTTCTAGGGCGAATAAACCGCAACAGGTGGCGAGGAATAAGAGAAGGTAATAATAAATTAAATTTTTTTAGAGGGTTTTCAAATCTATGCAAGCTTTGAATTGAATAATTGTGTTGAATGTGTATTTTTTGAAAAATGTGTGCAGGAAGAAGCAGGTGAAGAAAGTGGTGTGTCAAGTGCCAGTAGATGGGGTTGCGCCGGATCCATGGAGTTGGAGAAAGTACGGCCAGAAACCGATTAAAGGATCCCCCTTTCCCAGGTATGTATTCATTTGTTTATTTTTGTTTGTCGTTCACATAAAGAAGCATTATCTGAAATCATTTTGATTATTTTATTCTTCAAGCAACATATGTCAAGTTTTACATTTGGTAGGTGGGGGGAACTGAGATAATTAGGATCAAGAAAGTGAAATTGCTATAAAATTATCTTCTTTAAGAAAATTTACACTTTTTTTAATGTGTGTGTTTCAAAATCATGGATTTTTGAGGTTGGAAAATTATATGTAACACAGACCATCATAACCATCCATATCAAAGAGAGAGATCACTAACAAATTCCCTCTCATAAAGTAGTAATTGTCACACAGAACAAAAAAGAATATTTAGTTCTTTTTTATATTTAAACACGGAAGAACAAAGTAACAATACATATATCCTTTTGCTAAATCTTAGTTTAATTATTTAATGTAAAATGAACAGGGGCTACTACAGATGCAGCAGCATAAGAGGATGCCCCGCTCGAAAACAAGTGGAACGCAATAAAATAGACCCTACACAACTCATTATAACCTACACTTCAGAACACAACCACCCAATGCCTCCAAAGCACCGCATCTCAAATTCAACTGCCACCACATCCGACACCAAATGCAAAGACGATACTAACCTCATGTCTTCTCCCACCACCTCCACTTCAGTGGACGAAGAGGACAAAGAAGTAGAAGAAGATGTGTTAATGGTGGAGGACATGGAAGTGATTGGGGAGGACGAATTGGTGTTCACAGGGAGCGGAGAATCGAATTCATCGTGCTTTTTTGAAGATGTTGGTTTGTTAGATGATAGGATATTTGACTCACATTGGCTTGAGAAGGGTAGCAACGGCAATGCTACAGCTGCGGCTTGTTGAGTGTGTTTAGATTAGTAAGATGTACGTAGTTTTGGCTAACTGTTGTTTTGTTTTTATTATTATGTATGTGTTCCATATAGGATGAAGGAAGGATGTAATATTTTGTTCAGAAATAGATAGGATTCATAATGGGAATTGTTATATGTGCTAAAGTTATACTTTTTTTATTTTATTTTGGTAGTTGATGCAATATTGTTCAGTTTAGATGTAATTGTTCATGGTATCTATATAGAATGTCATTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020266850.1	1.3e-52	WRKY transcription factor 22-like
Swissprot	O04609.1	2.1e-28	WRKY DNA-binding protein 22
trEMBL	A0A5P1FUA4	9.1e-53	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G01250.1	42.00	1e-34	143	AtWRKY22;WRKY22	WRKY family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04090	AT4G01250.1	250	116	12	3	233	2	241	42.00	1e-34	143
AfisC2G04090	AT2G34830.1	91	21	2	98	178	186	275	64.84	7e-30	127
AfisC2G04090	AT5G52830.1	148	73	4	96	243	143	282	45.27	1e-29	127

Ortholog group

Species	Genes
Allium cepa	g108047.t1; g342868.t1
Allium fistulosum	AfisC2G04090
Allium sativum	Asa6G01743.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	119	176	85.6	2e-24

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009555	P	pollen development
GO:0009626	P	plant-type hypersensitive response
GO:0009793	P	embryo development ending in seed dormancy
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0051607	P	defense response to virus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network