result

Gene information

Detail information of AfisC2G04117

Location

Gene	Chr	Start	End	Strand
AfisC2G04117	chr2	668708882	668711899	+

Sequences

CDS

>AfisC2G04117
ATGGAAATCGAAAAAGGAAAAGATGTAGCAATTGAAAGTGCTAGTGATGAAATTGTTCCGAAGATGAAATTGATTGCTTCAATCGATCTAAACGAGGATGTAAATGAAGAAAAAGAAGAAGATATGGAAAGTATTGAAGATGATGGAGGAAGCACTAGTGAAATAGGAGGTAGTAGCTCAAGTAGTACTACAAATGATAAAAACAATAAAACTGAAAATAGTGCAAGTGATAATAGCAAGAAAAGCCAAGAAGAGAGAGGAGGATCAGCTGTGAGGCAATATATAAGGTCTAAAATGCCACGACTTCGATGGACTCCCGATCTACATACCTCTTTTGTTCAGGCAGTTGAAAGGCTTGGTGGTCAAGAAAGAGCAACACCAAAGTTGGTTCTGCAAATGATGAATGTGAGGGGCCTTTCTATTGCTCACGTAAAGAGCCATTTACAGATGTACAGAAGCAAGAAGCTTGATGATTTTGGACAAGAAAGGTCACCATTGTCTTCAGGATTATCTTCAATGGATAATTTTATGAGAAGGGATCACTTTCATGACATGTTATACCAAAGAGGATCATTTTCGCACCACATCCCCTTTAGACAAACCATGAATGAGTCTGATCGATTGCTAAGCCTTCTACAACGTTCACAAACCCTTGATTTTAACAATAATCGTAACAGACACCAAGAGTGGGCTTTTGCCAAACAAGGTGCTAGAGTTCCATCAAACAACGATCAAGGTCGAATACTGAGAAATGCAATAAGCGTGCCATCATCCCATCTTTTCGATGTTCGAGATGCAATTGTTCATAATGGCAATTCTTTGCCTAATAGTCAGGATCCAAGGTGGCCACCAGTTCGCAATGTGGTTGGTAATAATTATTATTGCATGGATGGAAAAAGAAATGGGCTAAGTAATTTAACATCCTTTTGCAAAGATAATCCTATGAGTGTAGCTTCTCCATCCAGTCATTCTCTTGGATGGGAAGGAAGAAGATCTGTGGATGGTAGTAGTAGTTGGAACCTAATTCGTTCTACTTGTAGGGACCCCATTATCATAAATGATGGAATTCAACCCCAACCTGAAATGCCACTACAATTTGATCAGCAAGCATATAAGTCAAAATTTAGTGGGATTTTTGCAAGAAAAGATGACGATTTCACAGGAATGAAGAGGATGAAAATGACAAAAGAGGACAATGATCATCAAATTCCTAGTTTGCAGTTAGGCCTAAGCATAGGCATAATGGAAGATACCGTCAATGCAAATAAGGAAATTGATCATCACCAGGCTAGAGATGGAGAAGTAAACCACATTTTATCGCTTTCACTTTTCCCTCCAAATCAAGCAAATAATAGTAATGTATCTAGTTATGATGAGTTAATAGAAAAAGATAATATGGATGTTAACAAGAAGAAGAAGGCTGCAGCAGCTTTGGGGCTGAGTACTTTAGATCTGACCATGTCGATTAAGGCGTTGGAGTGA

Protein

Gene

>AfisC2G04117
GTTTAATCATTTCATCACCTTTACCCTTCAATCCTACAACTACATAACACCATAAAATACATAAATTATTGCTCTTATAAGTCTCCCTCTCTTCTTCTTGATCCTTCCCCACTTCAACTAATCTCGACTTAAAATAGTCGAAACAAGACAGAGACCAATCAAAAATGGAAATCGAAAAAGGAAAAGATGTAGCAATTGAAAGTGCTAGTGATGAAATTGTTCCGAAGATGAAATTGATTGCTTCAATCGATCTAAACGAGGATGTAAATGAAGAAAAAGAAGAAGATATGGAAAGTATTGAAGATGATGGAGGAAGCACTAGTGAAATAGGAGGTAGTAGCTCAAGTAGTACTACAAATGATAAAAACAATAAAACTGAAAATAGTGCAAGTGATAATAGCAAGAAAAGCCAAGAAGAGAGAGGAGGATCAGCTGTGAGGCAATATATAAGGTCTAAAATGCCACGACTTCGATGGACTCCCGATCTACATACCTCTTTTGTTCAGGCAGTTGAAAGGCTTGGTGGTCAAGAAAGTAAGTAATCAATTATACATGTTTGAATTTGTAGTTTATTTGTTTAGAAATTGGATTGTGTTTCTGAGATTTATTTATTTATTTATTGTTACTGAAATTAATTTGCAGGAGCAACACCAAAGTTGGTTCTGCAAATGATGAATGTGAGGGGCCTTTCTATTGCTCACGTAAAGAGCCATTTACAGGTAGAAAAAGGAAAATACAAAATTAATTAATTCAATTTAAATTAAGTGTAAGGTTACTGTTCTAGAAAATCAGATTAATTTTATGAAGCTTAAGTAATTGGAAATACAAGTTGTGTGTAAAAATTATAGTAACCCTAATTTTAATTTGTGGTAAGTTTCAGATATGATAAATGTTTTGAGTGTTTTATGTAACCCTAATTTTCTTGTCATCATCTCAATTTGTGAATGCAGATGTACAGAAGCAAGAAGCTTGATGATTTTGGACAAGAAAGGTCACCATTGTCTTCAGGTTTATATTATTTATTTTTCTCATCGAACAAAAATCAGAATTAAATTCACAAATGTCTTGAAAATAAAGATCAATCTAGGTCATAATTTATGCAAATACCATTTTTTATTATAATCGACTTGTTTTGATTTTCAACCAGAGTAGTAGACGGTTCTTCCTTCGGAAAAGCATGTATCATAATGTTTACTCTATAGGGCGGGGAAACTATATTAATTAATATTTCGAGTTTCACTCATATATTATAATGTTTACTCTATAGGCAATGATATATTAATTAGTATTTCGAGTTTCACATACTAATTGAATTATATTATATTATAATTTGTGATTGCAGGATTATCTTCAATGGATAATTTTATGAGAAGGGATCACTTTCATGACATGTTATACCAAAGAGGATCATTTTCGCACCACATCCCCTTTAGACAAACCATGAATGAGTCTGATCGATTGCTAAGCCTTCTACAACGTTCACAAACCCTTGATTTTAACAATAATCGTAACAGGTATGCCCTTAAAAGGTTAACAAAGAGTTTGAAAAGTAATTTGAATGAGGATATTCTCTTATCACCTAGACCTTTTATTTCTAAATTGATAGTTCATATCTAGAGTTAAGACCTCTAGCCTAAATAGTAAATACACACTATAAACACTTAACCGTTTTGCTAGGAGTCCTCAATATCTAGTCGTGATATATAATTATTACCATCTTTTGATGTTGAAATCATATAAAATTAGAAGCATTACCCCTAATAGCAATCTCTTTGCTCTTGATCAATAGACACCAAGAGTGGGCTTTTGCCAAACAAGGTGCTAGAGTTCCATCAAACAACGATCAAGGTCGAATACTGAGAAATGCAATAAGCGTGCCATCATCCCATCTTTTCGATGTTCGAGATGCAATTGTTCATAATGGCAATTCTTTGCCTAATAGTCAGGATCCAAGGTGGCCACCAGTTCGCAATGTGGTTGGTAATAATTATTATTGCATGGATGGAAAAAGAAATGGGCTAAGTAATTTAACATCCTTTTGCAAAGATAATCCTATGAGTGTAGCTTCTCCATCCAGTCATTCTCTTGGATGGGAAGGAAGAAGATCTGTGGATGGTAGTAGTAGTTGGAACCTAATTCGTTCTACTTGTAGGGACCCCATTATCATAAATGATGGAATTCAACCCCAACCTGAAATGCCACTACAATTTGATCAGGTACATTACATATCTATCTGATTTTTTTTAATGTAATTAATATTATATAATCACAGCAAATCCAGATTAAAAATATAGAATAAGGTTTGAAAAATAGTTCATCTCATTGTAACACTAAAATATCAGCGTGAAGTTTAATGATTGAATTCCATGATCTGGAGTTTGATATTGTAGTGCATACCCCATGTAGATTTCCTCCTATATTAACATTCAAAATTCTAAGATGAAGAAATGCCAATATGTGTATATCTCACATAGGCGGTGTATAAAGAAACTAACATGCATGTTATATATACGTACATTGCACCAAATATGAGTAATAATCTTTCCTTTCTGATTTACAGCAAGCATATAAGTCAAAATTTAGTGGGATTTTTGCAAGAAAAGATGACGATTTCACAGGAATGAAGAGGATGAAAATGACAAAAGAGGACAATGATCATCAAATTCCTAGTTTGCAGTTAGGCCTAAGCATAGGCATAATGGAAGATACCGTCAATGCAAATAAGGAAATTGATCATCACCAGGCTAGAGATGGAGAAGTAAACCACATTTTATCGCTTTCACTTTTCCCTCCAAATCAAGCAAATAATAGTAATGTATCTAGTTATGATGAGTTAATAGAAAAAGATAATATGGATGTTAACAAGAAGAAGAAGGCTGCAGCAGCTTTGGGGCTGAGTACTTTAGATCTGACCATGTCGATTAAGGCGTTGGAGTGAGATCTTTCAAGTACTTGTCGGAAAGCTTTGTTATTTTATTATGAGAGAGCTAGTTATTTAGCTAGTTTACTATCTAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020266720.1	2.8e-87	uncharacterized protein LOC109842229
Swissprot	Q700D9.2	2.8e-20	Putative Myb family transcription factor At1g14600
trEMBL	A0A5P1FP96	2.0e-87	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38300.1	82.19	2e-31	134		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04117	AT2G38300.1	73	13	89	161	44	116	82.19	2e-31	134
AfisC2G04117	AT2G40260.1	76	19	83	158	66	141	75.00	3e-29	126
AfisC2G04117	AT2G42660.1	67	10	91	157	42	108	85.07	3e-29	126

Ortholog group

Species	Genes
Allium cepa	g444499.t1
Allium fistulosum	AfisC2G04117
Allium sativum	Asa6G01758.1
Arabidopsis thaliana
Oryza sativa	LOC_Os06g35140.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	101	152	36.1	4.7e-09

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003904	F	deoxyribodipyrimidine photo-lyase activity
GO:0005618	C	cell wall
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009650	P	UV protection
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009956	P	radial pattern formation
GO:0010051	P	xylem and phloem pattern formation
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity
GO:0080060	P	integument development
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network