result

Gene information

Detail information of AfisC2G04119

Location

Gene	Chr	Start	End	Strand
AfisC2G04119	chr2	669966134	669970715	-

Sequences

CDS

>AfisC2G04119
ATGTTTCTTCCCAAATCAATATTTTCACTCAACTCCTCCGCTTCCTCGAAATTTCCATCCACTCCCGCTTCTTGCCGCGTCCAACCGCAAAACGACGATATTGACGAGGTTACGACCGACGACCGGTGGTCCTCCATGCTACCTGAACTTCTGGGTGAGATTATCCGCCGCGTTGAGAAAAGCGAGGACACGTGGCCGATTCGCAAGAGCGTCGTTTCGTGCGCCTGTGTTTGCCGCCGGTGGCGCCGGATCACCACCGAAATCGTTGGCTCGATTAAAGATACTGGATTGATCACTTTTCCTTCTTCCCTTAAACAAGCCGGACCTAAAGAGCTTCCAATACAATGTTTTATCAAGAGGAACAAGAAGAATGCGACGTTCTATTTGTACCTCAGCTTGACCCAATTATTTATGGATAAAGGAAAGTTTCTAATGGCTGCTCGAAGAGTTAGGCATGGTGCCCATATCGAATACGTCATCTCCCTAGATGCCGATAACATATCACAAGGAAGTAGTGCGTATCTGGGAAAATTGAGATCCGATTTCTTGGGAACAAAGTTTACAATGTTTGACACTCGTGCTCCTCACACCAATGCAAAATCTTCAGGCAGTAGGAAAAGCTGCCATTTCACCAACAATCAAATTAGCCCACAACTCTCAATTGGAAACTTTGAAATAGGTCACATCTCGTACAAGTTTAATCTTCTTAAATCAAGAGGTCCTAGAAGGATGATATGCAAAATGCAGCCTCCGCTATCAGAAGAAGAAAACAGAAAAGAAGAAAGCGAAAAGGAAGAGAACAAAAGTGAAGAAAAACCCTACAAAGAAAATATGGTGTTGTGGAACAAAGTACCAAGGTGGCATGAACATCTTCAGTGCTGGTGCTTGAATTTTCATGGAAGAGTCACGATTGCTTCAGTTAAAAACTTTCAACTAACGGGGGAGGCTGGAGGTGATGACTCTGTTTTGCTACAGTTTGGAAAAGTTGGAGATGAATTGTTTACTATGGATTATAGGGAACCACTTTCTGCTTTTCAAGCATTTGCCATTTGCCTAAGTAGTTTTGGCACAAAATTTGCTTGTGAATAG

Protein

Gene

>AfisC2G04119
ATCTCTATTTTTTATTTTTATTATCCCCGTCCCTTCATTCAGAGTCTCAGACAAAACTGAAAAAGAAAAGGGGAAAAAATGTTTCTTCCCAAATCAATATTTTCACTCAACTCCTCCGCTTCCTCGAAATTTCCATCCACTCCCGCTTCTTGCCGCGTCCAACCGCAAAACGACGATATTGACGAGGTTACGACCGACGACCGGTGGTCCTCCATGCTACCTGAACTTCTGGGTGAGATTATCCGCCGCGTTGAGAAAAGCGAGGACACGTGGCCGATTCGCAAGAGCGTCGTTTCGTGCGCCTGTGTTTGCCGCCGGTGGCGCCGGATCACCACCGAAATCGTTGGCTCGATTAAAGATACTGGATTGATCACTTTTCCTTCTTCCCTTAAACAAGTACAGATTGTTTTTATTTGTTATTTTTAGATATTTTCGAGGTTGAATTAGATCTGTTATTTCGTTAGATTTTACGATTGCTTTGTGGGATATCAGTTGCGGTTGTTTTTTAAAAGGAATAATACTTTTTGACTTGAAGACATGTAAATGTTGTAGATCTATTTTGTTTTAAGATCATTTTTCCCAATTCGTGCCTTGCTTTTTATTTTGGAAGTATTTCATTTACTGTTGGAGAAGCAGTTAAATCGGATGTAAACAACTCACGATCCATTTTATTTATTTTCAAAAAATGAAATGATATAGTATGCAATAACATATGTTTTTGATGTTGAATGCAGGCCGGACCTAAAGAGCTTCCAATACAATGTTTTATCAAGAGGAACAAGAAGAATGCGACGTTCTATTTGTACCTCAGCTTGACCCAATGTGAGATTATATTCTTGGACAAATCTATATAATACACATTTAATGGTCAGCTTTTAGATATTTAGCTATAATAATTTATATAACTGATATGGATGGTTCTTATTTTTTTGCTTACAGTTGTTGGAATTGAAGTAAGCAGACAACCATGACTATGTTTTTTGATATTTATAATTGAGTTTGTTGAGATTTTTACTAGAAACTTTTTTTTGGAATTGTCAAAGCGAAAACCATATTATTGGATAAGGGGAACCACTGAAATTGTGTTCTAAGATAAAAATTGATTCGATAAGGGGAATGAACAAAATATTGGATAAGGGGAACCATTGAAAAACAGACCGTTGAAAAAATAATAACATTAATTTTAATTTTTTTTTTTGGGGGTGAGTTTTAGAAGATTTCAATTATTAACTTAAAGTTTAGTTATGTTTGAAATATTTTATTTTTGAACCTAAAACTTATTAAAAAAATAGCAATTTGATTTGCTAAACTTCAAATTTGAAAACTAAGATTTTTTTTCTTCTGGAAACTTCTGTTTTGATTTTTTTCCCTTGAAAATTTCAAGCTGTCATTTTCCACCAAATTATTAAAGGAAAATGTTATAAGGATATTTTGATCAATAATTGTTATAAAAACAAACAGAACCACTTTATCATTTTACCCTTATCAGAAAATCATATCTTCAAAAATTTTACTTAGCCAATCATACCCCTAATCAAATTTGCTTCTCCTTGTAACAACCACCTTTTTTTGATTTGATAAAAACATGAAGAAATAGTCATATGCTATGATCATCAGACTTGATTATAAACAACTATGATCATTAGAATTAGAATTTGATAATTTTTTCCAGGCGTGATCCATGGACAGCATCTCTCCTCGTAGTTCCATACTAGCAGGCAACAATTCTAGCAATAAGCTATAATGTAAAATTACAAAGATCATTCCACATAGTTCCATACTACAACCTGTATGTGTAAAGTATAAATCATCAATAGAGAACACAGATTTGGTTTTTATGCTAGCGGTACAATATATAGGGTTTGGATTCGGATGATATTCGGCAATTATAATGTGAACTGTCTGGTTCACCCCCCTTCATCTTTTGGCAACTGTTTTTCAAGTTATTTCGCTTATCCCCGATGTGTTATTGTTTGCCCCTGCTCCGTTAGATTTAAACTTTGTCATATAATAGTTGCAATAATTAGGGTATTAAAAGCTACTCTTTTGGCTGAAGCATCTTCTGTTACATGGATCTATTTTTGTTCTTATGATTTATATTACGTTATTTAGTGCATAAATTTCTATATTTGGCAGACCATGTCATTTGGCTTGCATAGTCTATTCGTGTAATCTTGTCAATGTAAAAACTTCTGATTTTCTTATTGTTAATTTTAGTAGGATAGAAAGGTGTTGGAAATTGTTATATATGTAGTATATCAAAACACATCTTCATGTTAGCACAAAATGGCAATCACCGAAGCAATTTGAGTCCATTGAATGATTTTTTTTTAAAAAAAAATTGATCAGCAAAATTAGAACTGAATGCTTATATGGGATGTTCGAAATTTGAAGGGGAAATGGACCTTCGTAGGACATGATTCTGTGTCCTGGATGTTGGCAAAGAAATGAGTTGTCTGCGAAATTGTTTATCTTTAATTGTTTGATATTGACTGGGTGATATATTAGAGCTCCTTGGGTATTATAGTAATATTGTCCACAGTGATGATGATATATGCTTTATGAAACGAAGAATTATGTTATGCTGCGCTTGTCCGGAATATTGCTTGGTGGATGACAATGTCATGCTGATTAAAGTGAACATTACATTATATGATTAAACATACTGCTAAATACACTTGTATATTTTTTACTGTCTAGCTGTTTAGTATTACAAGCTAGGCATAATTGCTAACGAATCTGAGCTTTCTGATTCATTTGAATGGAAAATGTTTAAGATGAAGATGGTTTCATTACAAACATTTTTTGTCCGATTAATGGGTTGCATTTCATTGATTTAAACTAAAGTAGTAAACTTTGAACTTTTTATTCCACTTCGATACCAAGCCATGTTACAAGCTATAAATAAGTTCATGCGTTAGTGTGTGTGGTGAGAAAAGACTGCAGAGTGATATAATTGTACTCTCGTCTGTTGACAAAAGTGCATAAATTCTTATATATTTTTATTTATTTTTAAAGCAGTATTTATGGATAAAGGAAAGTTTCTAATGGCTGCTCGAAGAGTTAGGCATGGTGCCCATATCGAATACGTCATCTCCCTAGATGCCGATAACATATCACAAGGAAGTAGTGCGTATCTGGGAAAATTGAGGTAATGCTTGTGCATTCGCTATGGATATAAAGAACAAGAAAAGTCGGTTAACATAATCATCAACCATCATGCATATATTGGTTTCCTTTAAACGTATTAATATAGTTCAAATTTCTTGTGTGAACTGTTTCATGAGACAATCACTCCATAAGTTTATATTTAATACCTGTCAGTTGGAGATCTCCAGAATAATATTGTCTTAAATGAATGATTTATGTTTGAATGTTAGTGTTCATGAATGTCTTTTATTTCTGGAGTTTGTCCCATAGGTTTTCCGGTGCCTTTAAATGGGTTTTCAATTGATTTAATGTCCCATTTTGAATTTTCCCCCTCCAAAACTAGAGTTGAATCATGTAAATATCATAAATTATTGACCAGTTTTAATGCAATCACCTAAAGGACTATTCTGCGGAGGAATTTTTCTTCTATTAATGTTTAAACATGCAATGCAAAGTAGCCAATCGACTCATTTTtCCGATGTATAAGAAATAGAACTCTTGATATTTGGTTTTGTAAAAATAGTCATAACCCCGAGCACAAGTTATTTCTGCCTCTCACCCCTTAAGTGAACAGTACCAACTTTTTTTCCCCCTTCTTTCCTTTCCTTTGCATAACATCATCTAAAATTTTCATGCATTAGCAGATCCGATTTCTTGGGAACAAAGTTTACAATGTTTGACACTCGTGCTCCTCACACCAATGCAAAATCTTCAGGCAGTAGGAAAAGCTGCCATTTCACCAACAATCAAATTAGCCCACAACTCTCAATTGGAAACTTTGAAATAGGTCACATCTCGTACAAGTTTAATCTTCTTAAATCAAGAGGTCCTAGAAGGATGATATGCAAAATGCAGCCTCCGCTATCAGAAGAAGAAAACAGAAAAGAAGAAAGCGAAAAGGAAGAGAACAAAAGTGAAGAAAAACCCTACAAAGAAAATATGGTGTTGTGGAACAAAGTACCAAGGTGGCATGAACATCTTCAGTGCTGGTGCTTGAATTTTCATGGAAGAGTCACGATTGCTTCAGTTAAAAACTTTCAACTAACGGGGGAGGCTGGAGGTGATGACTCTGTTTTGCTACAGTTTGGAAAAGTTGGAGATGAATTGTTTACTATGGATTATAGGGAACCACTTTCTGCTTTTCAAGCATTTGCCATTTGCCTAAGTAGTTTTGGCACAAAATTTGCTTGTGAATAGGAACATAAATGTAGATGGGTTGGGTTAAGTTATTGTGGGAAGAAGAATGTTCGATTGATATGCGCGTGTATGTTTGATGTGTAAAACTATAAAAGAAAATGTTCACTAACATAAGCTTCTTGAGTTTAGGAAGTTTATTTCTGTTCCATTTGATGTTTAATTGTAGTTTTATGTATGATGATACATCTTTTTGTAAATATTCATTGTAAGCAATGTTCCATATGCAATGTTTGGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245865.1	6.3e-137	tubby-like F-box protein 1 isoform X1
Swissprot	Q5QM27.1	1.5e-114	Tubby-like F-box protein 9
trEMBL	A0A8K0HXY7	3.6e-134	Tubby-like F-box protein 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G53320.1	55.87	1e-118	423	AtTLP7;TLP7	tubby like protein 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04119	AT1G53320.1	383	144	5	1	362	1	379	55.87	1e-118	423
AfisC2G04119	AT2G47900.3	356	144	7	43	362	52	407	49.44	2e-93	339
AfisC2G04119	AT2G47900.2	355	144	7	43	362	52	406	49.58	3e-93	338

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00646.30	F-box	Domain	43	88	24.4	1.8e-05
PF01167.15	Tub	Domain	108	355	269.9	1.4e-80

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0005929	C	cilium
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008081	F	phosphoric diester hydrolase activity
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009682	P	induced systemic resistance
GO:0009723	P	response to ethylene
GO:0044212	F	transcription regulatory region DNA binding
GO:0035091	F	phosphatidylinositol binding
GO:0042542	P	response to hydrogen peroxide
GO:0061512	P	protein localization to cilium
GO:0071470	P	cellular response to osmotic stress

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K19600	TULP1; tubby-related protein 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network