result

Gene information

Detail information of AfisC2G04220

Location

Gene	Chr	Start	End	Strand
AfisC2G04220	chr2	697107297	697110488	+

Sequences

CDS

>AfisC2G04220
ATGGAGAACGGTGCTTACAACGCGTATCTTCCTCAAATGTCCTTTGATTCAACCTCATCACAAACAATGCCAAGTTCTTACATCATCAATGATTCTTCATTACGCAGTGTATATATGAACAATAGCATGAATATTACCCCTCATGTTGGGAATACTGCGTTTGATAATATCATGGGAATTTCCATGCCTACTGAGTTATTCACTTATGATTACGAGATGCAAACACCAAAACATGCTGAAAATTTGAATGCGCTTCATGACTACAAACCTCAAATTCCTAAAACAGTGAGTAGAGTTTGCCCGACTTATCATATTTTAGGAAACTTGGAGAAGTCTACTACTACGAACTTTGATCCTTCATGCAGTAGTTATTATACTCCAAATAATGAGCTGTCTCTTAGCCTTGGCAACTCCGAAATGAGTTGCACGAGTTTTGCACAAGAATCAAGTTGTTTTCCATTCCCTGATCATGCAATTTTGGAGACAAGATTTCTTCGTGTAATGCAAGAAATACTTTCGGAAATCACTAGCTATGCATCAGGAGATTTTGATGATGATCAAATTGATGAAAATGAAACAGAAGAAATTATATCCTACTCTTCTAGTTGTTCCAGTGCAAATGGAATTCACGCTGCAATCAAAGATGATTTCCGGTGTTCTACCCGAGAAACTGTTTGTACAAAGAAGGCTGAGTTGCTAAACTTGCTTCAAATGGTTGACAGCCAATGCAACCAATATCTAAACCAAATACAGAACACAATGTCTAAATACCAAGGAAAAATCAACCAAGGAACTCCTCAAATGAATGCGCGATTCACTATTCAGAAAATCTCCACCTTCTACAGAAATCTAAGAAATAGAATCGCTAGTCATATCTTATCAACCAATGAGCATTATGTTCAGGAATCTGCTATGGAAAAAGAAAGAAGCTTCGAAACATCATTTGTACAAAAACATTGGGCTCTTCAGCAGCTTAAGAGAAACGAGCATCAGTCCTGGAGACCCCAAAGAGGCTTGCCCGAAAAATCTGTTTCTGTATTAAAGGCTTGGATGTTCCAGAACTTTCTGCATCCGTATCCAAAAGACAGTGAGAAGCAAATTCTTGCCATACAAAGTGGTTTAACACGGAGTCAGGTATCTAACTGGTTCATAAATGCTCGTGTTCGCCTATGGAAGCCTATGATAGAAGAAATGTATGCAGAAATTCATAAAAGAAATCAAGCAGAAGAAGGAACTGCTGGTGAAGGAAGAAATCTTGCAAATACTGGAAGTTAG

Protein

Gene

>AfisC2G04220
TCTCTGATCACTATGAAACAGATAAATGCTTCGTTTAGTGTCAGTTGATTAGTTGACATCTATGCCTAGATAGTGATATATATATTCATGATATGATCTGTACTTTTTGTTGTTCAGTTTTGTAAATGTTTTGTGTTGTTTGAGTATGTTTTTCACTTTCCTTTTTTAGTTAAACACAATATATTGATATGTTTATAATGCGATTATAGAATGTAGTGTTTATTTCAATTTCTTTCTCATCTCTATTGTTTTTATTTACCTCAGAACACAAGGTGAAAGATTGCTTCTTATTGATTGGTTTAAGAAAATTTTGTATCTGAAACCAGGTATGTTTCTTGAATTTCTACGTTTCATCATTTTGATGAGAGAGAAAAAAACAATTTCGAATTAATTCAGTTCTCTTCTTAACTTATTCTTCGACAAACCCTTTCATATTCGTGAAAAGTAAGAAGAATGGATGCATAATTTAACATGACTAGCTAGTTTCATTTAATATGTTCATATAGTAGGAAGGTAGAGTTTCAAGTTCTGCTGTTTTTGATTCACCATGTTATAAAGTATGCTATAATCTAGCATTTTAAAGTATGTGCATTTTCTATGCATGTCATTTGTTTGTAGAAATAGAAAAATATTGCATAGTTTTTGTTTATTCCTGAAATGTTAAGTATGGTAGATGAATTTTGTTTGTAGATCAAGCAGATGAATATTCTCCTATCATATCAAGCATTATATAATTGATAGACGCCTACAACTATAATTTACTGATATACATAAATCATCCTACAATATTAAATTTTTGTAGATGGATTATGCTTGTCTTTCATGTTATTTTTCTTTCTTTCTTTATTTTTATCTTTATCTGTTTAGGTTTTTGTTTCAGGGAACATTAGCGCTTATTTTAAATACAAAACATGTCTAACTGTTTTATGGTAGCGCATAATTTGTTTCTAATATCACTTCTTTTATCGATTCTATTATCATTTTTTTGATTTAACTTTCATTTCTGAAGCAGACGTTCAAATTCTATAAATTCAATTTGCATCAATGGAGAACGGTGCTTACAACGCGTATCTTCCTCAAATGTCCTTTGATTCAACCTCATCACAAACAATGCCAAGTTCTTACATCATCAATGATTCTTCATTACGCAGTGTATATATGAACAATAGCATGAATATTACCCCTCATGTTGGGAATACTGCGTTTGATAATATCATGGGAATTTCCATGCCTACTGAGTTATTCACTTATGATTACGAGATGCAAACACCAAAACATGCTGAAAATTTGAATGCGCTTCATGACTACAAACCTCAAATTCCTAAAACAGTGAGTAGAGTTTGCCCGACTTATCATATTTTAGGAAACTTGGAGAAGTCTACTACTACGAACTTTGATCCTTCATGCAGTAGTTATTATACTCCAAATAATGAGCTGTCTCTTAGCCTTGGCAACTCCGAAATGAGTTGCACGAGTTTTGCACAAGAATCAAGTTGTTTTCCATTCCCTGATCATGCAATTTTGGAGACAAGATTTCTTCGTGTAATGCAAGAAATACTTTCGGAAATCACTAGCTATGCATCAGGAGATTTTGATGATGATCAAATTGATGAAAATGAAACAGAAGAAATTATATCCTACTCTTCTAGTTGTTCCAGTGCAAATGGAATTCACGCTGCAATCAAAGATGATTTCCGGTGTTCTACCCGAGAAACTGTTTGTACAAAGAAGGCTGAGTTGCTAAACTTGCTTCAAATGGTATGTAATATATGTTCAAATGGGGGGATGTGTGCGTGTGTTAAAAATGGTGATATTAACATTTGAGCCACTAGACTTTGACATGTTAAATTAGTTAGTGTTGATAGTTGCATTTTCATAATCTATGTATTAAAATTTAGGCATGAAATATGAGAACCATAAACGTTACATGCAATAAGTTCAAGTGTAAATGTGAGGTATCCAAAATGGATGGATAATGAATAATGAGATGTCTCAGAAAAATAGTAATGTAGTTGTGCTAACCTTTTAAATTTATTTTATAGGTTGACAGCCAATGCAACCAATATCTAAACCAAATACAGAACACAATGTCTAAATACCAAGGAAAAATCAACCAAGGAACTCCTCAAATGAATGCGCGATTCACTATTCAGAAAATCTCCACCTTCTACAGAAATCTAAGAAATAGAATCGCTAGTCATATCTTATCAACCAATGAGCATTATGTTCAGGAATCTGCTATGGAAAAAGAAAGAAGCTTCGAAACATCATTTGTACAAAAACATTGGGCTCTTCAGCAGCTTAAGAGAAACGAGCATCAGTCCTGGAGACCCCAAAGAGGCTTGCCCGAAAAATCTGTTTCTGTATTAAAGGCTTGGATGTTCCAGAACTTTCTGCATCCGTGAGTTCAACTAAAACTAAAATCACATTCGTTTCTTGAACACTCCGAATTCCAGACTATTAACATAGGAATTTATCACTGTTGAGAAATCACAGTAGTTTTTAAAGGTTTTAGTTTTTAACTGCAGTAGAAACACATAGTCAAAAACGTGTTTTTGTTAGTCTAATGCTGAATTTAATGACCAACTGTAGAAAGTAACAGGTGTTTGGGCTAATACAGAATTTATTTATTTTTTCAATTCAGGTATCCAAAAGACAGTGAGAAGCAAATTCTTGCCATACAAAGTGGTTTAACACGGAGTCAGGTAGTCATTTTTGCAACTCCATTTATATACATTTTTCGCTTTTTTTTGGGGACATACAAATAATATGTGCTATGTACTGCTCTTTTTATATGTTACACTTAGGTAATACTAATTCCTTAGTCTGTGAATATGGGATAACATGGTATAGGTATCTAACTGGTTCATAAATGCTCGTGTTCGCCTATGGAAGCCTATGATAGAAGAAATGTATGCAGAAATTCATAAAAGAAATCAAGCAGAAGAAGGAACTGCTGGTGAAGGAAGAAATCTTGCAAATACTGGAAGTTAGAAAACCCGAATGAACTAAAGCTTTCAGCCTCGTGGAGCTTTATGTAAGCATTGTATCAGCTCTTGTTGTACATGAAGCAGTAGTGTGCAATAGTACATAAGTTGCAGAGTTAGCAATTATCTTTTGTTTTACTTCATTAAGCATGCTTATATCATTAACTCCAAATTTCAAGTGCAGTAATATATTATCCGTTGAATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249125.1	8.2e-80	homeobox protein ATH1-like
Swissprot	P48731.1	2.9e-53	Homeobox protein ATH1
trEMBL	A0A5P1FQV2	5.9e-80	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32980.1	45.13	2e-59	226	ATH1	homeobox gene 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04220	AT4G32980.1	308	126	10	128	405	151	445	45.13	2e-59	226
AfisC2G04220	AT2G35940.3	263	133	5	159	393	190	446	36.50	5e-42	168
AfisC2G04220	AT2G35940.2	263	133	5	159	393	190	446	36.50	5e-42	168

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07526.8	POX	Domain	159	289	73.7	2e-20
PF05920.8	Homeobox_KN	Family	350	389	55.1	4.5e-15

Gene Ontology

Accession	Ontology	Name
GO:0000790	C	nuclear chromatin
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001103	F	RNA polymerase II repressing transcription factor binding
GO:0001133	F	RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding
GO:0003682	F	chromatin binding
GO:0051015	F	actin filament binding
GO:0003785	F	actin monomer binding
GO:0005737	C	cytoplasm
GO:0008285	P	negative regulation of cell proliferation
GO:0009610	P	response to symbiotic fungus
GO:0009640	P	photomorphogenesis
GO:0009737	P	response to abscisic acid
GO:0010076	P	maintenance of floral meristem identity
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010197	P	polar nucleus fusion
GO:0010201	P	response to continuous far red light stimulus by the high-irradiance response system
GO:0010223	P	secondary shoot formation
GO:0010227	P	floral organ abscission
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010229	P	inflorescence development
GO:0010371	P	regulation of gibberellin biosynthetic process
GO:0015629	C	actin cytoskeleton
GO:0015630	C	microtubule cytoskeleton
GO:0035955	P	negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter
GO:0042803	F	protein homodimerization activity
GO:0046982	F	protein heterodimerization activity
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0080006	P	internode patterning
GO:0090470	P	shoot organ boundary specification

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network