result

Gene information

Detail information of AfisC2G04281

Location

Gene	Chr	Start	End	Strand
AfisC2G04281	chr2	709634748	709638428	-

Sequences

CDS

>AfisC2G04281
ATGGAGTTTGTTAAAGATGATGAAAAGGTTAGAGAAAAGAAAACAGGAGAAGACGGTTCTTTAAATTCATCTTCTCCGAAGAGAAAAGATCCAGACACAAGCAATATTCAGGTTTCCCCAGTAGTGGATAGTAAAAGATCGTCCATGGACTCATCTCCTTTAGGAATCAAGCAAACTAATCAGATTCTTGAATCTACTAAAGTAGAGATGGGAGAAGTTAGAGAAGAAAACGAAAGACTGAAGACTCTTCTTGCCAAAGTTGTGAAAGATTACAAGTCTCTACAAACACATTTCTTCGACATCGTCCAACACGAACAACCTTCAAAATCCGAAGAAGACACCTCAAAATCAATGCAAATTGTTGATCAAGACCCTGATCATCTCGTCTCACTAAGTCTTGGAACGAATAGTTATATTGAGCAAAAGAAGAATAAAGATAGCAGCAGTGATCAGAATAAAAATTATGGTCAAGAAGGGTTAAATCTTGGGTTGGATTTCAAATTCGAAGGGTCGAGTACTTCAAATACTAATGTCAGTGCAAGTAATAGCGTAGAGGAAGCGAAAGAAGAAGAGGCAGGAGAACAATGGCCGCCAAGTAAAATACAAAAGAGTATTGTCAGTGGTCCAGATGTTGATGAAGCTTCACAACAAGCACATGTTAAGAAGACTAGAGTTTCTGTGAGAGCAAGATGTGAAACACCAACTATGCATGATGGATGTCAATGGAGAAAATATGGACAAAAGATCGCCAAAGGGAATCCTTGCCCTAGGGCTTACTACAGATGCACTGTTGCAGCAGCATGTCCTGTTAGAAAACAGGTACAAAGATGTGCAGAAGACATGTCGATTCTGATAACAACATACGAAGGCACGCACAACCATCCATTACCGATGTCCGCAACGGCAATGGCCTCCACCACCTCAGCCGCTGCACGCATGTTGACCTCTGGATCAACCACTTCTTCGTCAAATCCTATAACCTCCATTCCAACCCTAAATTCGAACCCCATTACGAATCTGAATGCATTGAACTTCAACTTGTCAAACCCTAGTTCTCACTCGCGGCCTTTTTACTTCCCAAACCCCACCATCTCATCCACCCCTTCTTATCCGACCATCACGCTCGACCTAACTTCTCCACCGCAGACTAACATACAAACATCGCAATTTAACAGAATATTCCCTTCTAGATACTCCACCAACTTCAACTTCTCCTCTTCGGAGTCTAGCCCAACACTCCCAATAACATCTTGGCCCAGTGGATCATACTTAAACTACAACAAAAGCTCGATAGGACAAACAAGCTCTTTAGGGTCATTATCACAACAATCCTCCTACCTAGAAAGAGCTCCTAGCGTTCCATCAATGGGTGGTGGTCAGAATATGCTAACGGATACGATCGCAAAGGCGATTACATCCGACCCGAGTTTTCAATCTGCATTGGCTAATGCAATAACATCGTATGTGGGTGGACCCAATGGGCCAGCCCGTAATGGATCAGGTTTGATGTTGATGCAAAGCCCAATGAACTTTGTAAAACCGAAAAGCGCCTCGACATCTCCAGTCGAGAATAGAGAACACATCAACTAG

Protein

Gene

>AfisC2G04281
ATTTTATATATGTAATAATATATATGTGAATAAAGTTGGGTGTTATAAGAAGAGCAGTCCTCAAAGACAAAAATTAGGAAGATATCAACAAGAAAGTTATTTAACTCTCACTACACAAAGAAGTTTATTGTACATATTATTGTACCAAATTCAATGGAGTTTGTTAAAGATGATGAAAAGGTTAGTTTTCTCAACACTTATCATTAACTTAAATTTGTTTATCATGCACCTTTTAGTCAATATATTGTTTATATTAACTGCATGAGTTTACATAAATTCTTGTTATTACTTGTAATTTGTAAAGAGCTTGAATAATTTATGTGGTAGAGATGTTAATTCACAGATTTCAAGCTCTGTGTTGACTATTCGAGTTTTTTGTTTTCTGGTAAAGATATATTTGTACAAGTTGTAATTTGTATTGCATAGTATTATACACCATCTTATCTTGTAAAACCAAAATAATTTTCCAAAAACACGTGAAATAAAAAATAAATGATCACTTCATATTGATCATTTGAGTTGAGGTATATTTTTGTCCAAGTCAAAACAATAACTTTAAAGACGGATTTATGTAGGTAGATAAAAATTAGAGCTTGAAATTTATAGTCATCTAATAGCCTTACCTTTCAATAAGACTAAGAAGATCAATTCAATCATTATTATTCCGAATCTATATTCATATGTCTGAAAATAAGACTCTTATACAGGTTAGAGAAAAGAAAACAGGAGAAGACGGTTCTTTAAATTCATCTTCTCCGAAGAGAAAAGATCCAGACACAAGCAATATTCAGGTACACATGAACTTCTCATGCAAAAATAAGTAATTTTGTGTTATTTTAGTTTTAAAAAAATGTGATCCAATTTTGATAATATTTGCTTATTGCACAAACACGTACATGTTTATTTATCAGGTTTCCCCAGTAGTGGATAGTAAAAGATCGTCCATGGACTCATCTCCTTTAGGAATCAAGCAAACTAATCAGGTTAGGGTGGTAGAAATTTTTTTTGCACCGTACCCTATAAATATTATCAGACTTCAAAATTTTTAGAATGTTATAACATCGTTACAGATTCTTGAATCTACTAAAGTAGAGATGGGAGAAGTTAGAGAAGAAAACGAAAGACTGAAGACTCTTCTTGCCAAAGTTGTGAAAGATTACAAGTCTCTACAAACACATTTCTTCGACATCGTCCAACACGAACAACCTTCAAAATCCGAAGAAGACACCTCAAAATCAATGCAAATTGTTGATCAAGACCCTGATCATCTCGTCTCACTAAGTCTTGGAACGAATAGTTATATTGAGCAAAAGAAGAATAAAGATAGCAGCAGTGATCAGAATAAAAATTATGGTCAAGAAGGGTTAAATCTTGGGTTGGATTTCAAATTCGAAGGGTCGAGTACTTCAAATACTAATGTCAGTGCAAGTAATAGCGTAGAGGAAGCGAAAGAAGAAGAGGCAGGAGAACAATGGCCGCCAAGTAAAATACAAAAGAGTATTGTCAGTGGTCCAGATGTTGATGAAGCTTCACAACAAGCACATGTTAAGAAGACTAGAGTTTCTGTGAGAGCAAGATGTGAAACACCAACTGTAAGTGTAAACATGTTACATACATGTGCATCTATGGCTCATGATAGTAGCTTATTTGATGTTGTATATTGTTGTGTGTATCTGTAGATGCATGATGGATGTCAATGGAGAAAATATGGACAAAAGATCGCCAAAGGGAATCCTTGCCCTAGGGCTTACTACAGATGCACTGTTGCAGCAGCATGTCCTGTTAGAAAACAGGTAACAATACACGGATATGGAGCTTTGAAAGAAACATCAGAGTAACTTGTTTAATAGGCATGCAATTGGTTTTGTAGTTAAAAGTGTTAAACTTGAAAGCTCTGAGCATAAAACCAAGTTAAACTGTTTAATCATCTTCTAGTTATGCTGATCAAGCGGTTAGCACTATTAAGAATTAAAATTAACATGCAGAATTCAAGTCAGGCTTATGACATAAATCCCTAAGGCTCAGTCTGATAGCGTTTTTAAACTAATTTTGATTATTTGTAAATTTTGAACGGTTGAATGGTTTTGAATATTTTAAGCACTGGTCAAACTGAATAAACTGTATTTTTTATGGATGCTTTCAAACCGCTATAGTTTGTTTGTGATTGCTTTGAGAAAGAAAAAAATAAATCCAACTCTACTCACTCCAAAACAAATGCTTTTCTAAATACTTCATATACATACATACATATACATATTCATAGTTGTGTGTGTCAATAAGTGTGTAAAAGAGGGAGAATCTGATGTTTTTAAATCAAAAGATATAATTGATGTTTTTTAATCATTGGTTGATAGAATGCTTGATAGAAATTTTGTAAATTATGTATTTCGGCTTTTTGTTTTAAATTGACTTTATAAAAATTTGAATATTTGTAACATTAAAAGTATAGAATTTTAGTTTTGTAGAACTGCATTATAATAGTTATAGTTGATGTAATGTATTTCGTATTCATACACACACCCCCACCTAATTTTGGGATTCTAAACTATTATTAGAACCTATAAAAGTTAAGATTCAAATCATGGTTTTCTATAGTATAAAACCGCTATAGTAAGAACATCCTAAAACCAAAGCTTTCATTGAGTACCAAAGCTGATATCATCGAATTCTTTTGAAAACAATGCTACAAAAGTTTCAAACGTCTTAGTTTATTTAAACATAGAATTAACCCATTCATATTGACATCTTTTAAATCTTGAATTATCTCAGGTACAAAGATGTGCAGAAGACATGTCGATTCTGATAACAACATACGAAGGCACGCACAACCATCCATTACCGATGTCCGCAACGGCAATGGCCTCCACCACCTCAGCCGCTGCACGCATGTTGACCTCTGGATCAACCACTTCTTCGTCAAATCCTATAACCTCCATTCCAACCCTAAATTCGAACCCCATTACGAATCTGAATGCATTGAACTTCAACTTGTCAAACCCTAGTTCTCACTCGCGGCCTTTTTACTTCCCAAACCCCACCATCTCATCCACCCCTTCTTATCCGACCATCACGCTCGACCTAACTTCTCCACCGCAGACTAACATACAAACATCGCAATTTAACAGAATATTCCCTTCTAGATACTCCACCAACTTCAACTTCTCCTCTTCGGAGTCTAGCCCAACACTCCCAATAACATCTTGGCCCAGTGGATCATACTTAAACTACAACAAAAGCTCGATAGGACAAACAAGCTCTTTAGGGTCATTATCACAACAATCCTCCTACCTAGAAAGAGCTCCTAGCGTTCCATCAATGGGTGGTGGTCAGAATATGCTAACGGATACGATCGCAAAGGCGATTACATCCGACCCGAGTTTTCAATCTGCATTGGCTAATGCAATAACATCGTATGTGGGTGGACCCAATGGGCCAGCCCGTAATGGATCAGGTTTGATGTTGATGCAAAGCCCAATGAACTTTGTAAAACCGAAAAGCGCCTCGACATCTCCAGTCGAGAATAGAGAACACATCAACTAGAGTTGGTTTATTTTGATGGTTTAATGTAAATAATATTGTACCTAATTGTTAAAAGATTCGGTTCACGTGGTACTGTTATACAATTTATCAGTTAGACAGCTTGTCCAAATACTTGTTTGAAGCAGGAACTCGTACAATACT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017701724.1	1.9e-89	probable WRKY transcription factor 72 isoform X1
Swissprot	A0A3Q7GFB5.1	7.0e-57	WRKY DNA-binding protein 72A
trEMBL	A0A8B9AFM1	5.1e-89	WRKY transcription factor 72A-like isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15130.1	41.74	2e-73	273	ATWRKY72;WRKY72	WRKY DNA-binding protein 72

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04281	AT5G15130.1	472	194	17	60	490	33	464	41.74	2e-73	273
AfisC2G04281	AT1G18860.1	496	188	21	70	491	1	463	40.52	5e-62	235
AfisC2G04281	AT4G04450.1	333	153	9	66	378	109	416	40.54	3e-53	206

Ortholog group

Species	Genes
Allium cepa	g143060.t1; g510867.t1
Allium fistulosum	AfisC2G04281
Allium sativum	Asa6G01920.1
Arabidopsis thaliana	AT5G15130.1
Oryza sativa	LOC_Os06g05380.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	238	295	91.1	3.7e-26

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002237	P	response to molecule of bacterial origin
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0009267	P	cellular response to starvation
GO:0009611	P	response to wounding
GO:0009685	P	gibberellin metabolic process
GO:0009751	P	response to salicylic acid
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0070887	P	cellular response to chemical stimulus
GO:0043565	F	sequence-specific DNA binding
GO:0050691	P	regulation of defense response to virus by host

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network