result

Gene information

Detail information of AfisC2G04335

Location

Gene	Chr	Start	End	Strand
AfisC2G04335	chr2	716044981	716047424	+

Sequences

CDS

Protein

Gene

>AfisC2G04335
TGTAAAGCAAACATCAAACCACTCATCGGTTCAACAAAAATAAATATTAGAAAAACCAACGATTACGAGATAACCAGTGAAAGAGAATAGAACTTGTCTTCTTCACTTAATTTCCCTTACTACCTAAAAAGTCATGCTCAGTATTCTCCAGAATTTCCAGCCGCTGCAGAGGCTGCACCTCCTCAATTAATCTTTTTCTGAAAAACCAACAATTTCAGAATCTTCTCTCCTCTTTCTCTCTCCTCCAACTTTTTTTTCTTTGTTTAAACTTTTATTTGTTAAATCGATAAAACTTTTATTCTGGCTTCCACTAGAAGATTTTCCGATCACACAGGCGCCTTCGCCGACTGGGTAGCGACATCCGCCGCCGCAGCTCGAGGAGACGATCTGTGTCTTGGCTTCTCCGGCGGCGGTGGAGCCGCCACAGCCGCCTCCGCCGGTCGCCAGCAGCAGCAGCACGTCAACTACAACTTCTCCGACATGAGCAGCGTTGTCGGCCTGCGCGATGTATTCGTCGTAGCTCCACATCACGATTCCTTCTTCGAATCGGCCGGTATGAATAATTCATGGCACGGGCAGCATCTGAACACCAAATCGGTTTTAGAGACTGCGAGTATTTTTGGCGGGAGTGGGGGAGGAGTGACGTGCCAAGACTGCGGAAATCAGGCGAAGAAGGACTGCGGTCACAAGAGGTGTAGGACGTGCTGCAAGAGTAGAGGTTTCGACTGTTCTACGCACGTGAGGAGCACGTGGGTACCGGCAGCGAGGAGGAGGGAGAGGATGATGAGTGCTGGCGGTAATGGGGTCGGGATGGTTGGTTCGAATTCCGGGGTGAAGAAGATGAGGGTTTGTACGCAGCAGGCTGCGAATTCAAATAATTCAAATTCCAATTGTACTAGGAGTTTTGATACTGCAGGTTCGAGTCATCAAGGTACGAGTTTGATTTCATACATGAAAATGTTTGAATTCAATTTGTATTTTGTTTTTAGATTGATTTCTTCTATATTTTGAGCTCTAAGTGCACGATTTCATGAATATTTCTGCATTGTTCATTTAATTTGTTTTCAAGTCAAAATTACATTATGTACGCCAAATATCCATGATAAATTTCATATCATATATCAAATTCTTATGCTATGCTACACTATTTCTCCATTCTTCATTTGAATTTTTTAATTGAAATAACACTACGTGCACATAAATATATGAAAATTTCATATTTGTATTGAAATTTTTTTTAGGGCTTAACTAACTCAATTAGAATGCTAATGCTATGCTTCAAAAATGTTTTAGATTTTTTTTTCATTTTTTTTATGGTATGATATATCAGGTTCATACCTGTTTGAGTGCATGTAAATGTTAGCTTCTAACAAATTTTCAAAAGTATCATTGAACAATCGACCCGTGGAATATTTTATTTAAATACTAAAACAGCCCATCTTAACATCCTTCACCTTCATGTTTGACGTTTTCAATGCTCAGTTTATTCTTAATTTTGGATTTTGTAAATAAACATGTTGGGATGGTTTGAACTAAAACCTCTTCAATACCAACAATATTGAATTTATCATTTAGACAAATTATAACAGTAGCCTTTTTATGGATGCATATGTGTTTCTAAAACCTATAATTCGGCTATATTGTACATTTAAAGAATTGAATCTAAAGTATTTGTTTATAAAATCAAGCGCTTTAATTGAGAAAATTAAAATCCTGCAAAAGTACGCAGTGGTCTTATTTTGTAATGTATAAATTTACTTGCATGTGAAAGTACTTTAATACAAGTATCCTTTCGTTTATGTTAGATGCAAGTTTTAGGGAAAATCTACCAGGGCAGGTGAGAGCACCGGCGATCTTCAAATGCGTGCAAGTAACATCAATAGACGATGAAGGGGAAGATGAATATGCATATCAAGCCATGGTAAAAATAGGTGGTCACGTCTTTAAAGGATTTCTCTACGATCAAGGTGAAGATGATAATAACAACAGCGATACAAGCAAAACCACAAATAATGCAATACCAAATTTATCGGAGCTCCACTTAGGTGGTGGAGGATCCACTAGCGGCCATGCCGATATGACTGGACTGCTCGGAGGTACGAATTATGGCAACCCAATAAATTGATTAAATAAGTTATCATTTTAGTTTATATATATGTTCTACCATTTCCTTTTCATCTCAATTGTACGATTATATTGGTTGTATCACTTGCTGTTGAACTGTTTTTACTTTTAATTCGTAAGTTGTAGTAAAAGTAGTAACTATTATTATTTAATAAAGATAATCTATAAATGAGTAGTATTTTCTTTGTAAAGTCTCGACATTGATATGACCTGAAACAGTGTGCTACAGCTTTGTTTATGATTATTTATTTTATGAATATAAACTCAAGGGTGTAATCAAATCAAAGTTGTGAACACTGTTGGCACAATATCATTTGAAC

Functional annotation

Database	accession number	e-value	annotation
nr	PON75758.1	2.8e-51	hypothetical protein PanWU01x14_040180
Swissprot	Q94CK9.1	4.6e-30	Protein LATERAL ROOT PRIMORDIUM 1
trEMBL	A0A2P5DR48	2.0e-51	Protein LATERAL ROOT PRIMORDIUM 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G12330.4	56.45	7e-49	190	LRP1	Lateral root primordium (LRP) protein-related

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04335	AT5G12330.4	186	61	6	56	232	199	373	56.45	7e-49	190
AfisC2G04335	AT5G12330.1	186	61	6	56	232	112	286	56.45	3e-48	188
AfisC2G04335	AT5G12330.2	186	61	6	56	232	112	286	56.45	3e-48	188

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05142.9	DUF702	Family	53	207	193.0	3.3e-57

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0009299	P	mRNA transcription
GO:0009734	P	auxin-activated signaling pathway
GO:0009851	P	auxin biosynthetic process
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010051	P	xylem and phloem pattern formation
GO:0010252	P	auxin homeostasis
GO:0046982	F	protein heterodimerization activity
GO:0048479	P	style development
GO:0048480	P	stigma development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network