result

Gene information

Detail information of AfisC2G04557

Location

Gene	Chr	Start	End	Strand
AfisC2G04557	chr2	749786130	749787531	-

Sequences

CDS

Protein

Gene

>AfisC2G04557
ATTTTTCCCACCCTCCCTCTTCTTTCATAAGCCTCTTAAAAATCCCAACTTTTTTCATTTCAATTCATTTTCAATCTCTCTTTTCCTACCCTCCTCAATTCCCACTCGAAAGCCCTAATTCCTCTACCTCGACTCGCATGATTCGATCGATGAAGACAGAGAACTCCGAGTTCGATGGGGGTGACCAGATCGCCTCGTCCGGACCGTTTGATCATGGATTCATGTCCGAGATGCTCGGCTTCCAAGACTTCTCCTCTCAGTACTCCACCTTCTTCGATTTTCCACCTCCCTCTACTCCGGTGAGTTTGCCGTCCGAGGCGGTGAATTTACCACTCACTCCCAACGATTCTTCCATCTCCTCTTCCTCCAACGAAGTTCCCAGCGAGTCCGATCTCGGCAAGGCTGCGGTCACCACACCCGAAGCAGACGTGGACGACGATCCTGAAAAGGATAAGAACGAGTAAGTCAGTAAGCTCTTGATTTCTTTTACAATTAAATTCTTCTTCCATTGACAATCAGTTAAACTAATGGGCGCAGGCTTACAAAAGGCGGGAAGAAGAAGGGGCAAAAGCGAAAAAGAGAACAGAGATACGCCTTCCTGACGAAGAGCGAAGTCGACCATCTCGAAGATGGGTACAGGTGGCGCAAGTACGGCCAGAAGGCCGTCAAAAACAGCCCCTTTCCAAGGTAGGTACTTCAAATAAATGCAATTTCATTTGATTTTTAGTATTTTGTTTCCGAAACTAACATTGAGTTTTGCTTATGTAGGAGCTATTATAGATGCACTACGGCTATGTGCGGGGTGAAGAAGAGAGTCGAAAGGAGTTCTAAAGACTCAACGGTGGTGATCACTACTTATGAAGGGAAGCACACGCACCAGAGCCCCGTCGTGCCACGTGGCAGCCACGTCATCATGCATCAGCAACCTCATTTTGAGCGCTATGCTGCCATGGCTCCCCATATGCAGCTTGGAGTTCCCCCTTTTTTCATGAACTCTTACCTGCCGCAGCAGCAGCAGCATCAGCAGGTGGATTACCGCCAACTAGCACATCCAACGGCTGGGGATGGGACAAGTGTCAGGGATCATGGGTTGCTGCAGGATTTGATTCAGAGTGCAATCCCGAAGAATGAAGATGGATTTTGATAGGGTATGTTGGTAATTAATTAATTACTCAAGTTGATTTTTTTTTTTGAAGGATTATTAACCTTTTTTTAAATTAATTTAGCGAAATGATCATATGTATAATTAAGTTATAATAATTAATCTTATTTTGGATATTTTGATTATGGTTTTAAAGAACTTGATTAGGGTTTGCATTTGTATAGCTAGTGCTAGCCATCATTTATTGAATACGAGATGGTAATCATGAAATGAGATGGGCTTTGATTTTATTTGTTTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020276667.1	2.4e-67	LOW QUALITY PROTEIN: probable WRKY transcription factor 48
Swissprot	Q93WV4.1	7.3e-37	WRKY DNA-binding protein 71
trEMBL	A0A5P1EBP2	4.0e-64	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G69310.1	46.60	2e-39	159	ATWRKY57;WRKY57	WRKY DNA-binding protein 57

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04557	AT1G69310.2	206	92	5	69	271	90	280	46.60	2e-39	159
AfisC2G04557	AT1G69310.1	206	92	5	69	271	90	280	46.60	2e-39	159
AfisC2G04557	AT5G49520.1	181	69	3	122	275	205	384	46.41	1e-38	157

Ortholog group

Species	Genes
Allium cepa	g346145.t1
Allium fistulosum	AfisC2G04557
Allium sativum	Asa0G04291.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	138	195	90.8	4.6e-26

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006817	P	phosphate ion transport
GO:0008134	F	transcription factor binding
GO:0009414	P	response to water deprivation
GO:0009624	P	response to nematode
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0010055	P	atrichoblast differentiation
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032107	P	regulation of response to nutrient levels
GO:0043620	P	regulation of DNA-templated transcription in response to stress
GO:0048527	P	lateral root development
GO:0051607	P	defense response to virus
GO:0070301	P	cellular response to hydrogen peroxide
GO:1901002	P	positive regulation of response to salt stress
GO:1901141	P	regulation of lignin biosynthetic process
GO:1904369	P	positive regulation of sclerenchyma cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network