result

Gene information

Detail information of AfisC2G04571

Location

Gene	Chr	Start	End	Strand
AfisC2G04571	chr2	751040517	751044773	-

Sequences

CDS

Protein

Gene

>AfisC2G04571
ATGCGTCCGTTTCCGATGTACGAAGAAGAAGACAATGCACTCGGTTTCATAGCCAGCGCTGATTTCAGCTCCGACGCGGCGATGGACAGTCAGATTACTACGACTTCTTTGGTTCCGGTCACCTCCACGGTGGATAAAACAACGATGGGTCCCGTGCAGCAACAGAGGAGCTCCATCTTTAGAGGTGTAACAAGGTGATCTTTTTTATTTTGAAAATTTAAGTTAGCTTAAAAAATATGGATGTAAGTGGAGAATGTTGGAAGGAATAACACGTGGCAGTGCGCAAGTGCGGTTTTGGGGTGCAGGCACAGATGGACGGGGAGATACGAGGCGCACCTTTGGGATAACACATGCAGGAGGGAGGGGCAAAAGCGGAAAGGCAGGCAAGGTATAAAGCGCCCACATGTCATTTATGTTTTTCATTAAAATACCTTAAAAGTTGGTTTAATTTGTTCATGGCATGTTTACATGTAAAGGGTGGTAGAGCATGATTTGTGTGTGGAGAATATGACGGGGATGCCGCCGTTTAGTGCTTATAAAGTTTGATAAGACAAGTGATGGTGTCACTGTCAATTTTACACCTGAATATCTTATTTTATTTTTGTTCTATATATCGAGGCTTATTCAATATATTATGGTTTTATTTACTATTTTTTCTCTTTGTGTGTGTGTAAAACACTCATTTAATTGGTGAATAAACAGTAATTTATAGTGGTTGATACATCAGGATTTGTCGAAGATAATGTTTAGTTTAACCTAACTTAAAAAAAGAAAATCAAGCCAATTTCAACGTTCCACTGCCTTCTTTCCGTCGTGTTTTCTACTGTAAAAGTTTCAAATTTGATAGGTTTTACTTTTACATATGTGATCTTCTATTTGGTACATCTTTGTCCTGAAAAATGGTGCATTTTCAACGGCCATTCATTTTTTAGAAAATATTATGTCTATGTAGTCATGGTACCGAAGGGTTATTATTATTTGTTTTTCTAAATAATCCTAATTTTCTACAAATAATCTTCATCGTACAAATTTTATCCAAAATTTTAACTCAACTCATAAAATTTACTGCCACGATGGATGAACGAATGATGTTATGTGAATACTGAAATTTACTTTCTATATGTTATCATTATTTGAAGTGTAAATACATTTATTAACTACCGTGACTACGCAGATTTTATTGTACGTTCTTTCAAAAATTTATGGAACAGTTTATCTGATCACACTCGCACCCAAAAAAAAGAAGGAAAAAAGATTGAAAGAAAAAAAGGGAAGTGCAAATTGAATGTACGTTACTGTTATTATAGTTTCACTTAACAACGAAGTTTTCAGCTCATGTATTTTAAAAAAAAAATTGGTGAACTAATCGACCTTGATATTTTGTAATAATTTCAATAAAGATATGACTAACCTCTTAATTTTTTCCTCAATGCTGAAATGAAAATAAATCAGCCAAGCTTTTACTTTCTTTCAATCAACTACCGCTGCAGATCAAACATGTTACAATTATTGCCTTTCGATTACAATTATCAAAAACATATATATGTTTAAAATGCCAACTATAAAATCTTAAACCACCTCAAACAGGCTTGTGATGTACTTAATTAATCATTGAGAAGTTAAGATCAGATTGCTCACTCAAGTTACAATGCTTCACTCAAGCTCTCATATGATCAAATTTCAAATTTTAAATTAATCGTGGCTGCATTGTAGGGCATATGCGTCTATACTGTATCTTATTAAAAGTTTTGACATTATTTTCGAAAATGAATATGTTGGATAGTGCTTCAGCTAGTTATTGTTTGAAACAGAACAAATGCTAAGCTTATGTCAACTAAATTACAACTGAATATTACAATATTAGTTTGTGAAAGTAGTTGGTTTCTTTTAGTGATGGTTTGTCATTAGTTATATATACATCAAAGAAGATGACATAATTGCCCAAAACCATGCTTGGCTTGATGGCTCGAGAAACACTTTACTCCATTATTTTTAAGTCTGAAATTGCCAAGTGTTTTTTTGTTTAAATACAATGCAATGAAAAGGGGTGCCACCTTGATGCACTAAAAAGGCTGGAAATGTCTAAGTCGCAACTTGTTATCGCTTCCCTTTGTATTTCCTATTATTATTTTGACTTGAAAGAACTAGTTAATGTGATTTATTGTGCTTATTAGTATCAAAATATGATTGTCGACAAGTGAGTAGGTGGGTAATTGTCTTGTCACGTGTTTTTTCCCCCTTTGAAACCAGAGAATCTGCATTTAGTAAAACTGAAATGTTAGTTTTAAGCAGTTAATCATAAGGTACGCTTCATTTGATTATTCGAGTACTATTTCATGTTCTGTTTTTATGAGTTATTTGCGGGCGGTGGCTGCAGCCAGCAGCAGGTACTGCCACTTGAATGCATGGTTCAGCTTTCAGTCCTCCCTCTCTGCAAAAATCCTCCCTCTCTGCAAAGAAAAAAAGCAACTTTAACAGTTAACCCCTTATTAAAATCAATACTTTCTTAAAAAATTCTTTTTTATACGACTATCTTTAAAAAGCAGATTATATCCAATGGCTGGTTGAAAATATATTCATTATCCGAGCAAAGATGTTTGAGACAAGACAGTTTGATCAGCAGTAGAGCCTACAATGATACAGTGGAGTACACCAAGAAAATATTTGAGTGATGTGACAATACGTTTTGAAACATATTAGTACACTCCATATTTCGTACTTTGATGTGGTTTATTTTGTATACTTGATTGATGTAACTTTTTCGGTAGTACATGTTTTTAGCTTGCACTGTTCTTCAGTTTCATGTCTAGTCTTTTGTATTAAAGTATCTTTGACCATGTTTCAAACCTTGGACTCTCTTTTTGTGTCATATTTTTTACAATTACTACGCTCCCTACATTGCATATGCTTTGATTCCATGGTCTTTTTGTGTATCATAATGTCAAACTTTTTGTTTCTTTTGGTAGTAGCTTGAGTTATAGTGGATTATTCATGACTTAATAAAAAGGGAAATGGCTGATATTGCTGTTGAGCACACGGACATTTAAATCTGTTACTATAACTACAGTGTTATATATTTGCTGATTTTGCGTATTTTCTTGACATGTACTGGTGATGACGATCATGGAATATATTTATAATGCAGTCTACTTAGGTGAGGGTTCATTCACAACATAAAACCAAATTTACAAGTTGACCGTTTAACTCATTTTTGAATTTTGCATTTAGGCGGTTACGAAAAAGAGGAAAATGCAGCTAAAGCATACGATCTAGCCGCTCTGAAATACTGGGGTTCTTCTGCCAACACTAACTTTCCAGTTACTCATCATGATCACTTTAGTAAATTTATATTTCTCAAACATAATTTGACAGTTTCATACATGCAGGCAAGTAACTACAATCAGGAAATAGAAATCATGAAAAACATGACTAAGCAAGAATTTATCGCCTCCATCAGAAGGTAATAGCAGTTAATTTTCAGAATTAGCTCTCCAAAGTAAGGTTATGTGCCAATAACTGCAAAATTTTCAGGAACAGTAGTGGTTTTGCAAGGGGGGCTTCTATATACAGAGGAGTCACAAGGTATACTTCTCACCATTTCATTTTATATCACGGGATGGACAAGTGATTATTGGTATATCTTATACATTTAGACATCACAAGCATGGTCGTTGGCAAGCTAGGATCGGTAGAGTTGCAGGCAATAAGGATCTCTACCTAGGAACATTTTGTAAGCCCAATACTTTTCATCAACTAATTTTAAGGTGTTTTTTTTTCTTTTCAAACAACAGTTGTAAATAATATAATTTGTGAATGGTGATCATAGCCACAGAAGAAGAAGCAGCAGAGGCTTATGACGTAGCAGCAATAAAGTTTAGGGGGTCGAGTGCAGTAACCAACTTTGCACTTTGCAGATATGATACAAATGCGATTGCCAACAGCGATCTACCAGTTGGATCAACCACTAAAAGAACCAAAAAGGCTCCCAAAGTGAAAAGCTCCCAAGTTTTCACCGGAAACATTGGTGATGTTGTTTGCAACTTGGAGTTCAGCAACTGGAACGCAGTATGCCAGATGGCAGCATCAAACCATAGCAGCGTGGGAGAATCCAATTCTGCACCAGTTTACAACTTTTTCAATGATGATTGCTCGACTTCGATTTCCTACTCTGATGTTTGTGGGCAGAACTTCTACTGGATGCTTCCTGATGCACAAGGCATCGTGCATGGAAGCGAACTCCTTAAGCTAACTTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274949.1	3.5e-84	AP2-like ethylene-responsive transcription factor AIL7
Swissprot	Q52QU2.1	2.8e-78	Protein AINTEGUMENTA-LIKE 6
trEMBL	A0A5P1EEP2	2.5e-84	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G51190.1	68.16	2e-84	309	PLT2	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04571	AT1G51190.1	223	43	4	55	272	186	385	68.16	2e-84	309
AfisC2G04571	AT5G57390.1	214	46	2	55	265	199	389	66.36	8e-83	304
AfisC2G04571	AT5G57390.1	91	49	1	163	245	185	275	37.36	1e-11	67.4

Ortholog group

Species	Genes
Allium cepa	g394518.t1
Allium fistulosum	AfisC2G04571
Allium sativum	Asa0G05235.1; Asa6G02175.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	59	114	33.3	3.9e-08
PF00847.17	AP2	Domain	180	231	43.6	2.3e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009755	P	hormone-mediated signaling pathway
GO:0010073	P	meristem maintenance
GO:0010093	P	specification of floral organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019432	P	triglyceride biosynthetic process
GO:0019827	P	stem cell population maintenance
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048316	P	seed development
GO:0048481	P	plant ovule development
GO:1901959	P	positive regulation of cutin biosynthetic process
GO:1904278	P	positive regulation of wax biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network