Detail information of AfisC2G04613


Location
GeneChrStartEndStrand
AfisC2G04613chr2756461218756483895-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020276716.13.0e-294SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
SwissprotQ498E7.15.2e-97Sucrose nonfermenting protein 2-like 1
trEMBLA0A5P1EE842.2e-294SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G48310.163.720.0 870CHA18;CHR18chromatin remodeling factor18

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag540214.t1
Allium fistulosumAfisC2G04613
Allium sativumAsa6G02207.1
Arabidopsis thalianaAT1G48310.1
Oryza sativaLOC_Os07g44210.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily193428103.01.2e-29
PF00271.28Helicase_CFamily47358448.87e-13

Gene Ontology
AccessionOntologyName
GO:0000278Pmitotic cell cycle
GO:0036292PDNA rewinding
GO:0036310Fannealing helicase activity
GO:0001525Pangiogenesis
GO:0003678FDNA helicase activity
GO:0042623FATPase activity, coupled
GO:0004520Fendodeoxyribonuclease activity
GO:0005654Cnucleoplasm
GO:0006281PDNA repair
GO:0006325Pchromatin organization
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0009411Presponse to UV
GO:0010172Pembryonic body morphogenesis
GO:0030097Phemopoiesis
GO:0030154Pcell differentiation
GO:0031297Preplication fork processing
GO:0043234Cprotein complex
GO:0043596Cnuclear replication fork
GO:0045910Pnegative regulation of DNA recombination
GO:0048478Preplication fork protection
GO:0048589Pdevelopmental growth
GO:0051216Pcartilage development
GO:0070530FK63-linked polyubiquitin binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14440SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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