result

Gene information

Detail information of AfisC2G04891

Location

Gene	Chr	Start	End	Strand
AfisC2G04891	chr2	811472754	811474336	-

Sequences

CDS

Protein

Gene

>AfisC2G04891
AATAAAAAGTGTGATACTCTAGAAACATCTTCCTAATAATGTATGAATATTACTAAAATTCCCAAGCAAGCAAGTTTTGTTTTTGTTTGATATGCAGTACAAGAATAAAATAGATCATTTAACCAAACAGTTCAGCTATTTAAAAATAATTATTACCTGACAGCTCTAGAAATGTTGGATTAATAGAAATCTTGCACTACATTGGTTGGAAAAAAAAATCAAAAAAATATGTTTCTACTTTCAAAGAGTTCCGGATTTTCCATTCGATATATAGGTTCAGTTGTAGTTATATTTATTTTCACAATACGGATATCGACCACGTGCAGCGCACTTGCACTCAATCATTAATTTACACACATGAATACTTTGATCATTAATTTTCAAAGTATGGTTATTGAAACCATGCACAAAACTACACATATCACAGTTTTTGTGGTTTATGAGCGTGCTTTTAATTTTGGTTTAGTTGGACTACTAAGAGATCATGAAGATTGTAGATGGAGGTGGGGCGACTATTTAGTGCCGGATTTAACAAAAGAACCTTTCTCTGAAGAAGAAGTGAAAATTGTCATGGATCAACATGAATTGGTGGGAAATAGGTGAAGCCCTGAGAACTCCAGAATTACACTTCATAAAATACTTGCATGTTATTGGAAACAAACCTAAACCATGTCCTTTAAAAATAATAATATTAAGATTTTGATGTTTATTTTCTTAAGGTGGGCTGAAATAGCAAAATACCTTCCAGGAAGAACTGGTAATGATGTCCAGATGTTTTGGGAAGCTCACATGAAAAACAAAGACAAACTAAAAAATGAAGACATGAATACCGAAGTTAACGGCAATATTAGTAAGTAAATAAATTTTGTCATGCATCTACTTATGTTAATCAAATCAACAAACATGAGTTTTCCTCTTGTTCATTTATAGTGTCCTCTAGCTCTGTGAACAAATCAGAATCACCAAAAGGGAAGGAAGTGGTTGAAGTGGAAGAAACTGGTTGCAAGAATACCAACAACGAGGAGAGGATTGCTGAGTTTAAAGAATTTGAAGACAACAATGCTTGGGCTTATGAGGTTGAAGAACACCATATCTACCTCAGTTTGATGAACAATCCATGTACAAGTTCTGATTTTGAGGTAGACGATGACTGCTTCAAGCTATGGAATTTCCCCTAGTAAAAAGAAGCCAGGTTAATGCTTCTTATTTAGATATATATCATAAAATAAAGCAAGCTATATTGCAAGCTTGTGTCTGAGCTACCATCTAGGTAGTGGTAATGCAATGAAATTTCAGTTGAAGCTGTTCTTTTCATGAAATATATTCCGAGTTTGAAACTAATATAGAATAGTAACATCTGATACATCAGACCTATATAAAGCATATGTTGCAATATGTCTAACCAGTGAATTAAAACATATACACTGATACACAAATATCATGCACACTGCTTTTGATAGAAAAGTACCATCTATTTATTGAGTGGATTTGTGGAACCGGAAGTGCAAGCTTGCAATGGTAACATGCATGCCTTTCTACTGTAAACATATTCTTTGTTCTATAAGAAGGGGGTTATATGCTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021842058.1	9.1e-16	transcription factor MYB41-like
Swissprot	M1ETA5.1	4.4e-15	R2R3 MYB transcriptional regulator 1
trEMBL	A0A2P5B271	1.5e-15	MYB transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G12720.1	46.74	5e-18	87.4	ATMYB67;ATY53;MYB67;MYB67	myb domain protein 67

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04891	AT3G61250.1	73	38	0	36	108	43	115	47.95	5e-18	87.4
AfisC2G04891	AT3G12720.1	92	46	1	36	127	53	141	46.74	5e-18	87.4
AfisC2G04891	AT3G13890.2	72	37	0	37	108	44	115	48.61	1e-17	86.3

Ortholog group

Species	Genes
Allium cepa	g381049.t1
Allium fistulosum	AfisC2G04891
Allium sativum	Asa1G01930.1; Asa1G02737.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	60	102	39.6	3.8e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0005654	C	nucleoplasm
GO:0009723	P	response to ethylene
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0009901	P	anther dehiscence
GO:0010183	P	pollen tube guidance
GO:0031523	C	Myb complex
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045697	P	regulation of synergid differentiation
GO:0045926	P	negative regulation of growth
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048235	P	pollen sperm cell differentiation
GO:0051302	P	regulation of cell division
GO:0090307	P	mitotic spindle assembly

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network