result

Gene information

Detail information of AfisC2G04908

Location

Gene	Chr	Start	End	Strand
AfisC2G04908	chr2	813819112	813820885	-

Sequences

CDS

Protein

Gene

>AfisC2G04908
AAACACACACCAAAATCAATCATTTAAATTAAACAAATAATTTCCATGGCACCAAAGCTCACCAAACCCGCCGCTGCAGCTGCTCCCGCCGCCTCCATCAAAGAAGTCCACTTTCGCGGTGTCAGAAAGAGACCATGGGGCCGGTATGCGGCGGAGATTAGAGATCCGAGCAAAAAGAGCCGCGTCTGGCTCGGTACCTTCGACACTGCGGAGGAGGCCGCCAGAGCGTACGATGCCGCCGCCATCGAGTTTCGCGGTTCAAAAGCTAAGACCAACTTCCCGTACGTGTCGCCGCCAACGATCGTTGGCAGTCCCAGCAGCCAGAGCAGCACCGTCGAGTCGTCGTCGCCTCCTCAGATGCCGACTGCAATGTCTTTGGACCTGGATCTGAGGGTTTCATCTGGGAATTTCAGGCCTGTGTTTTATTTCGATTTGATGGGAAGCGGGTCCGGCAACGAGAAGGTGAAATCTGAGAAGAATGAGGCGGCGGCAGCGGCGGGTGTGACGAGCGAATCGGATTCGTCGGAGGTGGTTGACGTGGCGGTTGGGCCCAAGAGGGTTTTTGGATTCGATCTGAATGAGCTTCCGCCACCTGAATTCGCTTAGATCCGTTTGGTAGAACTTTTTTAAGCTAAAGTTTTTCGTTAAAAAAAAGTAATTAAACGTAAACTTTTAAAAAGAGTGGTGGTTAGGTTGGGAGTAAGAATTTTGTAAATAAACTAAAAAAATGTTCTCCGTTTTTTTCAGTAAGAAGATGGATCTCATCTTGCTGTTGTTGTAACCCCTCTGTTTACTTGTTAATCGAATATCATTTGTTATTTTACCCGATGTTCTGTGTCTATAATTCTTTTTATTGCGATGGTCGATGAATTTAACTGTAAATTCCACAATTTCATCAATTTCCATTTTGAGTTCCTTTTAATTTTGTGGAAGGACGGCAGCTTACAAAGAAACCCAAGAGCATTTCATATTTATTTATTTAGAAACAAACAGAGTTGGATCTGAAGGCTGAAGCAAATAGCAAAGAAGAAAGGGGTGGACTGAATAAAAAGCCGGCGTAAGGTAAAATTAGTGGGGCAGAGAAGAAAGTGGAGAGAGGAAACTAATGAGCGAAAAGAAAGCGTGTGAGCGTAGATGTTGAAATGACGACCCTGAAGATATGCAAAATCACATTGACGCTGAACACGTCCACGTGTACGTTTGAAGGTAAAATAAAATAAGCTGATGGGAAGGCAGAATAGTCAATTTATTCTTCTGTCTCCTGACGCCGGCTACACAGAGAACCTTGCTGTTGCGGGTCCCATTTCAGAATTACCCTTTTTTTTTATTCGGCGCCCGCTTTCGTGTCTGCCACTTTACCCAACTCCCTCCGTCTCTCTGTTGCCTTGTCTCCCTTATGTACCCGCAGCCCATTGCATCTCCATTTTGATGGGCTAAGATATTTTATTGGGCCTCACCATTTTGTTTCTACAGCAATTTGTATACTGGTGTTGAATTTTTCAACATTCTTTCAAATACACTCTCTGTCTCTCTCTTCATAGTACCTCCTTCAACTCGCTGTTTGAACAAAGCAGCCCAGCATATTATTAAATATAATATCTGAATCCGGGCCTGCCCACGTATTAGCGGGTTTTGGACAACAAATTATCATGACACATCTGTACTAACTGTTGAAAGTTGAAACCTATCATGGTAAAAATTAAACTTATTATTGTACGTGAAATTTCAAATATTATTACAGTCATACGTTCGAATCTCAACGATTGCAGTCTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_007148134.1	1.9e-33	hypothetical protein PHAVU_006G183100g
Swissprot	O80340.1	3.9e-31	Protein RELATED TO APETALA2 5
trEMBL	A0A834ZQ28	5.7e-35	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G15210.1	50.34	6e-33	137	ATERF-4;ATERF4;ERF4;RAP2.5	ethylene responsive element binding factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04908	AT3G15210.1	149	53	3	8	135	10	158	50.34	6e-33	137
AfisC2G04908	AT5G44210.1	178	73	4	19	182	29	196	45.51	7e-30	126
AfisC2G04908	AT1G03800.1	77	24	0	5	81	35	111	68.83	1e-26	116

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	22	71	53.1	2.6e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009880	P	embryonic pattern specification
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network