result

Gene information

Detail information of AfisC2G05265

Location

Gene	Chr	Start	End	Strand
AfisC2G05265	chr2	868462661	868463822	-

Sequences

CDS

Protein

Gene

>AfisC2G05265
ATGGCGAACAATACATGTGGTTCAGGGAATCCATGCGGAGCATGCAAATTTCTACGTAGGAAGTGTGTACCAGACTGCATATTTGCACCTTACTTTGCATGTGATGAGGGGTCTGATAGGTTTGCTGCAATCCATAAAATATTTGGTGCTAGTAACGCATCGAAGCTGCTGCTGCATTTGCCGGTGCATGATCGTTGTGAGGCGGTGGTTACTGTTGCTTATGAGGCTCAGGCAAGGATTAGGGATCCTGTTTATGGCTGTGTTGGTCATATCTTTGCTCTCCAACAACAGGTATTTAGTTAACATATTCTAGAGAAGAAGTCAGAAATTACTATTGTAGGTCTATTAGGGTCGGTATTGGTTGCCGCTTATTAGTATTTAACATGATTTCTTCAGAAAGAATGGTTTAAAGGGAAACTAAAGATTTTTTCCTGAACGATATTTAATTGTGTTGCTAAAGATTTGAGTTCATTTTGCTTACAATGGCCACGTTCAAAATATAGTTTATGAGGGATTAAATTTGTGCTTGAATTTGATTATGTCTGGAATATAACCTAGCTGAAGCTCATTGATTTGAATCATCTGCTCCCTAGGGATTAAATTTCACACTTAGTAGTTCCAATCTACCGGCCTTGCATTTTATCCGCATGTAAAAATTTGGTAAAATGTATAAACTGCGTAGATCAATTTTGTTTTGATCTAGCGGTCCAAATCAACAGATGAATTTTATTTTGATTTTGAACCGGAGAAGGTGATCTAGTTTCAACACACATATTGTTTTACTCCTACTAGTTATTATTAAAGATAAATATGTATCATAATAGTGTATGCTTAATATCTAGGAGGACTATGTATATGTTATGTTTTAATTTAGGTAGCGAAATTGCAAGCACAATGCGTACAAGTGAAAGCTCATTTGGCTCATGGTATGTCTGGGCCTAGATCTTTTACTGAGGAGAATGACGCTTTAGTTCCTAACCATATGCAATCATTCCCAAATATGCTATATGATCATCATCATAACGTAAATTTTGAAGGGTTTTCGGATTATAGAATATGTAGAAGTAAAGATGAAGGTTCTTCTACGAAGAAGAGAGCTGCGCCACACAATTATGAGTTGGGAGAGCTTCAAGCTTTGGCATTTAAAATGATGAAGGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KAE7997793.1	3.3e-52	hypothetical protein FH972_002396
Swissprot	Q9SLB7.1	1.5e-41	ASYMMETRIC LEAVES 2-like protein 18
trEMBL	A0A5N6QHW9	2.4e-52	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G42430.1	46.25	7e-49	189	ASL18;LBD16	lateral organ boundaries-domain 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05265	AT2G42430.1	240	76	8	4	192	8	245	46.25	7e-49	189
AfisC2G05265	AT3G58190.1	116	41	0	11	126	11	126	64.66	5e-41	163
AfisC2G05265	AT4G00210.1	123	45	1	1	121	1	123	61.79	8e-41	163

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	11	109	126.9	2.8e-37

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005654	C	nucleoplasm
GO:0009799	P	specification of symmetry
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0010089	P	xylem development
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010311	P	lateral root formation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048441	P	petal development
GO:1900150	P	regulation of defense response to fungus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13944	LBD16; LOB domain-containing protein 16	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network