result

Gene information

Detail information of AfisC2G05361

Location

Gene	Chr	Start	End	Strand
AfisC2G05361	chr2	885979169	885982140	+

Sequences

CDS

Protein

Gene

>AfisC2G05361
ATATGTATTTCTTGTTTTTTTGGTGCAGTGATATTAACATATGACCGACACACGGAAATAATATTTAAGCATACCAGCTAGCATTCAAAATGACAAATTAATGTTCTTTCTCTCTCCTCTTATTTTTTTCATTTAAATAAAAACCCATTTCTCATTTTGCCCATCAATTTTCCTTCATTCTTCCATTCTATTTCTGTCCATTTTCTTTTTCATTCCTTCTTCTGTCGCTTAACTATTACATAATTGTTCCGTTCTGTGGTTAAGAGTTCATTAGTGCTGTTTGATTGAGGGTTTGAAGAGAGAACTTTGAAAGTTTTTGATCAGTGGTACTATTCTGAACTTTTGATTACTTCGAGTTTATTTGTTTTTCATGCGTTCATACTACTGAATTTATAATTGGGGTTTAATCGAAATTATGAATTTAGTACTTTATCATTTATTAGGGCCCTAAATGACTGAATTGTGCTTCTCTCTGAAAATGCGTTAATTATATTGATGAATTTTGTAATAAATTAATGGAATTTTTGTAATAAAAAGAAATCCATGACTGGGAATGCTATGCATGCCATATTTCTACACATAACATTTATATTCTGTCAAGAAAAGGCATGTTGAAGGGAATAAGTTCTTGCTATTGTGACATTTAAATTTTTTGCCAATTTAAATTGATGCCAATTATCAAAATATCTTCTTTCTGTGAGCGATTTGTCAAGTAATTGGAGTGCTTAAATAAGAAATGAATTACATTTAACATATTTATAAATTAAATTTTCTTTATTATAAAATTTTTACATAAAATTTTGGTTTCAAATGCAGCCGTTATTCCCCTCTTTTGGCAAATGAACATACAACTTAAGTTACTGATTATTTATTCTAAAATTTTGGAATTGACCTTCAAATTTCATTATAGAGTTGAAATCACGTTTGCCAAATGACCTAAATTTCCTTTTTTTTACAGTAAAAGCAGTCAATTAGGACACAGTAATTAAAAATATATAAATTTGAATGGTGACGTACAACCAGTCAATAGAAAGTTTCCACGTGTACTAGGAGTTATTTATTTTACACCAATATTGATCTCCTAAGAGAAAAATAGTTTTTTTAGTTAAATTTTTTTTAATGAAAATATAACCGAAGGGGTGGGGAATTATATTTACTCGTTTTCTGATTCAGTTTTCATACGCTTTGCCTTTGTAAAATTACTAACGCTGTGTATGGCACTAAGATGGCAGTGTGGGTAAAATGTAGTCATTTTATTTCCATCCGAGTTAAATAAAATACTGAATGGATGTATTTAGCCCAACAACTTCAAATTTACTTAGGCAAATCAATATAAAAGTGTACTTGCTGCATACTGCTATTTCAAGGATACAACCAATAGAGTCCTACATATAATAATGGGTGGGGTTAGCTTAATTGACATGATACCAATAAACAAAAATATAGTTGGATAAAATTACATTTACTCGAGAAATAATTGAGCATTCAATTCCACCTAACCTACTGTTGCAACGTTGTCATCACTAACTAATCTTTGGCAGACGTTAACAAACGTAGAAATCCTTTACATCATGCTATAATCATAGACACTCAATGCATATATACATTCGCTTACAAATACACTGATAAATGTATTGCAGAGAATGGCTCAAAACAACTATATTGATGATCAACTTGATATTATGTGCGAGGGCTTCTTTGACAACATCGATGATTTGTTGGACTTCTCTGCCGATGAAGAAACTTTAGGGATGGCTGATTCTAACAATGCCCTTATGAACATTCCTCCAGCTACTGAATTTCCTGCTCTGGGTAGCAAAGATGTTCAAGTCATGCCTGCTTCAGAGGAAAACAAAATCGTATGTTACCATTCTTTAGACATATGTTATTCTCTTTGTGAGTTTGAACTTTAATGTATTTCAAGAGTTCAATGCACTGGTAATAACAATTTTATCTATAATCCAAAATTGAAAAATGGATTAAACCAAACTTTACTCTTTTTTTTCCTAAGTGAATCCTCTCATCGTTTTTAGGGTAATGATTTTGGCATGAATGAAGATTGGTTTTCAAATTTCTTATACGACGTCAACCTAGACGAAGAAATGAAGAAAAATGAACCCCTGTTCCTATCATTCAGCCCTGACTCTGTGCTTGAACCGAGCAACCTCAGCACTGAAAAGATAATATCACCCTCGTCGTCTTCCTCCTCGTCCTCATCTTCATCCTCCTATACTACATCTCTGCCGTCGTTAAGCCTTTCTAAAGCTCCGATCCCTGCGCGTGCACGCAGTAAGAGGCCACGAAAGCCCATAATCCCAGTGCCACCTCCTGCACCACTTCTACTTGCAGCACCAGAGCCAGCAACCATCAAGAAGATCAAAATCAAAGTAAGAAGCACCGATCCAGAAGACAGCACAGGAGCCAGAAAATGCAGGCACTGCGGGATACAGAAGACCCCACAGTGGAGGGCAGGGCCCATGGGACCTAAAACCCTCTGCAATGCTTGTGGGGTACGTTACAAGTCCGGAAGGCTGTTTCCAGAGTACCGTCCTGCTGTTAGCCCTACGTTTGTGCCTAGCGTGCATTCCAATTCCCATAAGAAGGTGGTGGAGATTAGGAACAAGGTTATTGAGACTAAGGTTGTGAATGAGTATAACCCTGCTGCTAAGAACTGTGATCTTCTCAAGTATATTAGGGTTTAGGCTATGAGTTTCGGTAGTGTGTGGTTAAAATTTGGTTGGTTATTTATTTTGTTCTTTTCTTTTTATGTTTCCCTTTGCTTTTTTGTATAGAAGGTAGGAATTAAGGAGTAGGAAGTGATACCTAGAATTGAATTTAGATGATTAATAAGGGAGAATTAGGTTGGGGTTTGTTGTATAAGGGGAAACTATTAGTCTAGTTTGATGTTCAGCTTGTTGTATTCAATTTGTTTTTTGCAGTTAAATTGATTCCTCTGGAGTCTTAGAGTGATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020570577.1	6.2e-34	GATA transcription factor 4-like
Swissprot	Q9SV30.1	9.0e-30	GATA transcription factor 8
trEMBL	A0A2I0WIN1	4.5e-34	GATA transcription factor 9

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32890.1	35.07	1e-33	140	GATA9	GATA transcription factor 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05361	AT4G32890.1	288	149	9	22	293	20	285	35.07	1e-33	140
AfisC2G05361	AT3G54810.1	67	11	0	203	269	229	295	83.58	2e-31	133
AfisC2G05361	AT3G54810.2	67	11	0	203	269	229	295	83.58	2e-31	133

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	205	238	57.8	5.4e-16

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009725	P	response to hormone
GO:0009845	P	seed germination
GO:0030154	P	cell differentiation
GO:0048581	P	negative regulation of post-embryonic development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network