result

Gene information

Detail information of AfisC2G05471

Location

Gene	Chr	Start	End	Strand
AfisC2G05471	chr2	900171070	900172479	+

Sequences

CDS

Protein

Gene

>AfisC2G05471
CTAACACTTGTATTAAAAAGCAAAAAAATAAAAAACATGATAGAGTAATATTAGTACAACTTTCACTGAGTCATCCAGATCTTAAACATACGACGACAAAAGGATTAAACAACACTGCCAGCTGGCAGAGCAGATAAAGGAGAAGAAATATAGAGGGAGTGAACCATTTTATCAAGCAACAAAGAATAATAAGCTAGGACCCTTGCTTACCTTTCGATAGTATTTAAAATAAGTTTTCCACTCCTACAATTCTAATTGGCTTCCCTGTTGCTATCAATCGTTTCTCTCTCTCTCTCTCTCCTTATTTTCTTCCAATTCTTTCACAAAGTCTATATCCTCTACTTCCAAGTTATCAAGCAAAAAGTTTACGCCAAAAAAAAAGAAAAAAGAAGGGAATATGGACGAGAGTGAAGAAGAAGAATGCTATGGGAATGAATTATGGATGGAGGATCCATTACTGATGAAAGAAGGAAGCAGTAAAGACAAGAAGAGGCGATTTACCGATGATCAAGTTAAGTCGTTAGAGCTCATGTTCGAGACTCAGACTAAGTTAGAACCGAGAAAGAAGCTGCAGCTTGCCAAGGAGTTGGGGCTGCACCCGAGACAAGTTGCCATTTGGTTTCAGAACAAGCGAGCGAGGTGGAAGTCGAAGCAGCTCGAAAGAGAGTACAGTGCTTTGAGAGCAGATTACGATGCACTCTCCTCTAAATGCGAGTCTCTTAAAAGGGAGAAGCAAACGCTTTCCAAGCAGGTATTGTAATCAATTTTAAAAGTTTATTCAAGCTGTAATTTTGATCTTTCTGTCGTGATTCTTTTTGATGATTTAACACAGATAAAGAAACTGGAAGAACTTGTGGAAAAGTCGGTAGAGGGGAGGAAGAAGGAGAGCAGCTGCAGCGAAGATAATCAAAGAGTAGATACAAAGCTTGAAACTGGGAACGATGCTGAGGAGAATAGATACGTAAAATTTAGCGAGAACGAGATGGATTTCTTGTCGCCAATTGAAAGTTCAATGGAGGTACCTGAGCATCAATTTTGTTTCGATCAACCAAGCTGGCCTTCTACAGACCAGTCATGTGCGAATATACAATGGTGGGAATTTTGGCCTATGACTGAAGAAAAGCAAATTAGCAACGTTGAAGAGTGAAAAAGACATGAATTGCCAGGGAACCGATGCGCAAATGCTCTTTCAGGTCAGCAAGGACAGAATGAAGGAAAGTAAGATTGTTAATAGCTCTACATTATTATCCTGTAATCCAAAATAAGTAATTAGTAGTTGGTGGTGTTATATATGATAATGTTTTTGTAAAGATCTCATATGAGATGATGAGACTGTGTGCTCCCAAAAACTGATGTACAATGGATATATAGAGTTGAAGGAATAAAAAAGTTAGAATGGTGGTTGAGAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241391.1	3.3e-40	homeobox-leucine zipper protein HOX6-like
Swissprot	P46897.2	3.4e-21	Homeodomain transcription factor ATHB-7
trEMBL	A0A199USG5	1.0e-22	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46680.1	55.94	2e-36	149	ATHB-7;ATHB7;HB-7	homeobox 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05471	AT2G46680.1	143	56	3	21	160	23	161	55.94	2e-36	149
AfisC2G05471	AT2G46680.2	143	54	4	21	160	23	159	55.94	2e-34	142
AfisC2G05471	AT3G61890.1	126	60	1	33	158	33	157	51.59	4e-32	134

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	29	83	60.5	9e-17
PF02183.15	HALZ	Family	85	126	52.5	3.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0009615	P	response to virus
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network